View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_41 (Length: 284)
Name: NF16768_high_41
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 25070317 - 25070506
Alignment:
| Q |
13 |
agcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaatttttgtttcccttggcccctatttacatgcttgatagatt |
112 |
Q |
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| T |
25070317 |
agcaaaggtcgacatctgacctcattaaggtaaatgtcctttcaacttgcaaaacacaatttttgtttcccttggcccctatttacatgcttgatagatt |
25070416 |
T |
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| Q |
113 |
gttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattgatgagttctggaatcatctcatta |
202 |
Q |
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| T |
25070417 |
gttgatcatattgtctaactcatttgaatttttttcattatacatgtttgataaaatattaaattgatgagttctggaatcatctcatta |
25070506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 25128292 - 25128481
Alignment:
| Q |
13 |
agcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaatttttgtttcccttggcccctatttacatgcttgatagatt |
112 |
Q |
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| T |
25128292 |
agcaaaggtcgacatctgacctcattaaggtaaatgtcctttcaacttgcaaaacacaatttttgtttcccttggcccctatttacatgcttgatagatt |
25128391 |
T |
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| Q |
113 |
gttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattgatgagttctggaatcatctcatta |
202 |
Q |
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| T |
25128392 |
gttgatcatattgtctaactcatttgaatttttttcattatacatgtttgataaaatattaaattgatgagttctggaatcatctcatta |
25128481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25102676 - 25102739
Alignment:
| Q |
13 |
agcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt |
76 |
Q |
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| T |
25102676 |
agcaaaggttgacatctgacctcattaaggtaaatgtccctccaacttttaaaacacaattttt |
25102739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25161770 - 25161833
Alignment:
| Q |
13 |
agcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt |
76 |
Q |
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| T |
25161770 |
agcaaaggttgacatctgacctcattaaggtaaatgtccctccaacttttaaaacacaattttt |
25161833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25217020 - 25217083
Alignment:
| Q |
13 |
agcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt |
76 |
Q |
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| T |
25217020 |
agcaaaggttgacatcttacctcattaaggtaaatgtccttacaatttgtaaaacacaattttt |
25217083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25281175 - 25281238
Alignment:
| Q |
13 |
agcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt |
76 |
Q |
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| T |
25281175 |
agcaaaggttgacatcttacctcattaaggtaaatgtccttacaatttgtaaaacacaattttt |
25281238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 25102773 - 25102876
Alignment:
| Q |
79 |
ttcccttggcccctatttacatgcttgatagattgttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattg |
178 |
Q |
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||||||||| | | ||||||||| |||||||| ||||||| ||| ||||||||||||||||| | ||||||||||||| |||||| |||| ||| |
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| T |
25102773 |
ttcccttggtctccatttacatgtttgatagaatgttgattatactgtctaactcatttgaattattttctttatacatgtttggtaaaatgttaagttg |
25102872 |
T |
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| Q |
179 |
atga |
182 |
Q |
| |
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|||| |
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| T |
25102873 |
atga |
25102876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 25161867 - 25161970
Alignment:
| Q |
79 |
ttcccttggcccctatttacatgcttgatagattgttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattg |
178 |
Q |
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||||||||| | | ||||||||| |||||||| ||||||| ||| ||||||||||||||||| | ||||||||||||| |||||| |||| ||| |
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| T |
25161867 |
ttcccttggtctccatttacatgtttgatagaatgttgattatactgtctaactcatttgaattattttctttatacatgtttggtaaaatgttaagttg |
25161966 |
T |
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| Q |
179 |
atga |
182 |
Q |
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|||| |
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| T |
25161967 |
atga |
25161970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 25217152 - 25217198
Alignment:
| Q |
94 |
tttacatgcttgatagattgttgatcatattgtctaactcatttgaa |
140 |
Q |
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|||||||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
25217152 |
tttacatgtttgatagaatgttgattatattgtctaactcatttgaa |
25217198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 25281307 - 25281353
Alignment:
| Q |
94 |
tttacatgcttgatagattgttgatcatattgtctaactcatttgaa |
140 |
Q |
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|||||||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
25281307 |
tttacatgtttgatagaatgttgattatattgtctaactcatttgaa |
25281353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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