View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_44 (Length: 252)
Name: NF16768_high_44
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_44 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 20865654 - 20865415
Alignment:
| Q |
13 |
catagggaaaattttaaatagtaggttcaggtctatcaactaaaacgttcacaatgataagccatggatgaatttcagaaacaaacaagattaagcaaag |
112 |
Q |
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| T |
20865654 |
catagagaaaattgtaaatagtaggttcaggtctatcaactaaaacgttcacaatgatcagccatggatgaatttcagaaacaaacaagattaagcaaag |
20865555 |
T |
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| Q |
113 |
aaaatacatcatagagatatcttctcccatgacacactcaacattaaacctattcatcttcaaataacagtttttaacacctcaattactggatcttaaa |
212 |
Q |
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| T |
20865554 |
aaaatacatcatagagatatcttctcccatgacacactcaacattaaacctattcatcttcaaataacagtttttaacacctcaattactggatcttaaa |
20865455 |
T |
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| Q |
213 |
ttatcaaatgtccattggagaaccaccttggtcttggttt |
252 |
Q |
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| T |
20865454 |
ttatcaaatgtccattggagaaccaccttggtcttggttt |
20865415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 3402337 - 3402093
Alignment:
| Q |
8 |
agtagcatagggaaaattttaaatagtaggttcaggtctatcaactaaaacgttcacaatgataagccatggatgaatttcagaaacaaacaagattaag |
107 |
Q |
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|||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3402337 |
agtatcatagagaaaattgtaaatagtaggttcaggtctatcaactaaaacgttcacaatgatcagccatggatgaatttcagaaacaaacaagattaag |
3402238 |
T |
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| Q |
108 |
caaagaaaatacatcatagagatatcttctcccatgacacactcaacattaaacctattcatcttcaaataacagtttttaacacctcaattactggatc |
207 |
Q |
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| T |
3402237 |
caaagaaaatacatcatagagatatcttctcccatgacacactcaacattaaacctattcattttcagataacagtttttaacacctcaagtactggatc |
3402138 |
T |
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| Q |
208 |
ttaaattatcaaatgtccattggagaaccaccttggtcttggttt |
252 |
Q |
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| T |
3402137 |
ttaaattatcaaatgcccattggagaaccaccttggtcttggttt |
3402093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 7130254 - 7130500
Alignment:
| Q |
8 |
agtagcatagggaaaattttaaatagtaggttcaggtctatcaa---------ctaaaacgttcacaatgataagccatggatgaatttcagaaacaaac |
98 |
Q |
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|||| ||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||| |||| |||||||||||||| |||||||||||| |
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| T |
7130254 |
agtatcatagagaaaattgtaaatagtaggttcaagtctatcaaatggagctactaaaacgtttacagtgatcagccatggatgaatatcagaaacaaac |
7130353 |
T |
|
| Q |
99 |
aagattaagcaaagaaaatacatcatagagatatcttctcccatgacacactcaacattaaacctattcatcttcaaataacagtttttaacacctcaat |
198 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||| |||| |
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| T |
7130354 |
aagattaagcaaagaaaatacatcaacaagatatcttctcccatgacacactcaacatgaaacctattcatttttaaagaacagtttttaacacatcaaa |
7130453 |
T |
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| Q |
199 |
tactggatcttaaattatcaaatgtccattggagaaccaccttggtc |
245 |
Q |
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| T |
7130454 |
tactggatcataaattatcaaatgtccattggagaaccaccttggtc |
7130500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 53043353 - 53043416
Alignment:
| Q |
181 |
agtttttaacacctcaattactggatcttaaattatcaaatgtccattggagaaccaccttggt |
244 |
Q |
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| T |
53043353 |
agtttttaacacctcaagtactggatcttaagttatcaaatgtccattggagaaccaccttggt |
53043416 |
T |
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