View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_45 (Length: 249)
Name: NF16768_high_45
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 35054616 - 35054391
Alignment:
| Q |
17 |
gtttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054616 |
gtttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaa |
35054517 |
T |
|
| Q |
117 |
actcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054516 |
actcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattg |
35054417 |
T |
|
| Q |
217 |
ttttagtataaggtggtattcctttg |
242 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35054416 |
ttttagtataaggtggtattcctttg |
35054391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 35071358 - 35071133
Alignment:
| Q |
17 |
gtttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071358 |
gtttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaa |
35071259 |
T |
|
| Q |
117 |
actcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071258 |
actcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattg |
35071159 |
T |
|
| Q |
217 |
ttttagtataaggtggtattcctttg |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35071158 |
ttttagtataaggtggtattcctttg |
35071133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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