View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_52 (Length: 238)
Name: NF16768_high_52
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 33178065 - 33178274
Alignment:
| Q |
17 |
acattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtatgtgtatatttgcatctatctctccattctttttattatat |
116 |
Q |
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| T |
33178065 |
acattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgtgtatatttgcatctatctctccattctttttattatat |
33178164 |
T |
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| Q |
117 |
agtatactgcttctaactaaataatgttaacttgtttgtttattacgtagggacatgaatatcaagcaagtgtggagcaattggacaacattaatccccc |
216 |
Q |
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| T |
33178165 |
agtatactgcttctaactaaataatgttaacttgtttgttta-tacgtagggacatgaatatcaagcaagtgtggagcaattggacaacattaatccccc |
33178263 |
T |
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| Q |
217 |
tgctaacttca |
227 |
Q |
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||||||||||| |
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| T |
33178264 |
tgctaacttca |
33178274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 33155277 - 33155472
Alignment:
| Q |
17 |
acattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtatgtgtatatttgcatctatctctccattctttttattatat |
116 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||| || || |||| | |
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| T |
33155277 |
acattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgtatatatttgcacctattt----att-ttctttttatgt |
33155371 |
T |
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| Q |
117 |
agtatactgcttctaactaaataatgttaacttgtttgtttattacgtagggacatgaatatcaagcaagtgtggagcaattggacaacattaatccccc |
216 |
Q |
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| T |
33155372 |
agtatactgcttttagttgaataatgttaacttgtttgattattac--agggacatgaacaacaaacaagtctggagcagttagataacattaacccccc |
33155469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 33137488 - 33137549
Alignment:
| Q |
17 |
acattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtatgt |
78 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
33137488 |
acattgctgggaacatccttacacgttcaacccatgttgttgataacgttctgcaagtatgt |
33137549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33290420 - 33290360
Alignment:
| Q |
17 |
acattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtatg |
77 |
Q |
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||||||||| |||||||||| ||||||||| || ||||||| ||| ||||||||||||| |
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| T |
33290420 |
acattgctgcaaacattcttaggcgttcaacctatattgttgaaaacgttgtgcaagtatg |
33290360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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