View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_55 (Length: 231)
Name: NF16768_high_55
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 38320686 - 38320515
Alignment:
| Q |
41 |
ttctctctcacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaaca |
140 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320686 |
ttctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaaca |
38320587 |
T |
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| Q |
141 |
aatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320586 |
aatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaa |
38320515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 38305860 - 38305688
Alignment:
| Q |
41 |
ttctctctcacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaaca |
140 |
Q |
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||||||| |||||||| ||| ||||||| |||| ||||||| ||||||||||||| ||||| ||||||| ||||||| ||||||| || |||||||| |
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| T |
38305860 |
ttctctcacacatctcggctacagtgggtaaaacaacacagaagttgagaaccttactatttaacttccaatccgcgtcaacaaaatgcgcagtcaaaca |
38305761 |
T |
|
| Q |
141 |
aatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaat |
213 |
Q |
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| T |
38305760 |
gatataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaat |
38305688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 38299941 - 38299771
Alignment:
| Q |
41 |
ttctctctcacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaaca |
140 |
Q |
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||||||| |||||||||| | ||||||| |||| |||||| | ||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
38299941 |
ttctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaaca |
38299842 |
T |
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| Q |
141 |
aatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagcca |
211 |
Q |
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||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
38299841 |
gatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagcca |
38299771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 38316543 - 38316416
Alignment:
| Q |
86 |
tgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaa |
185 |
Q |
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||||||||||||| || || ||||||||||||||| |||||||||| |||||||||||||||||||| || ||| |||||||||| ||||| |||||| |
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| T |
38316543 |
tgagaaccttactattcaacttccaattcgcgtcaacaaaatgagctgtcaaacaaatataagtctcagtggtgttagattcccacaaatcaaaagttaa |
38316444 |
T |
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| Q |
186 |
agatatcctattaggaatggtagccaat |
213 |
Q |
| |
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||||||||||||||||||| |||||||| |
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| T |
38316443 |
agatatcctattaggaatgctagccaat |
38316416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 38325397 - 38325261
Alignment:
| Q |
77 |
tacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatc |
176 |
Q |
| |
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||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||| |||| | |||||||| |||||||||| ||| |
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| T |
38325397 |
tacagaaattgagaaccttactatttaccttccaattcgcgtcaacaaaatgagcggtcagacaaatgtaaggcatagtagtgcaagattcccacaaatc |
38325298 |
T |
|
| Q |
177 |
aacagttaaagatatcctattaggaatggtagccaat |
213 |
Q |
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|| ||||||||||| |||||||||||||||||||||| |
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| T |
38325297 |
aaaagttaaagataccctattaggaatggtagccaat |
38325261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 38313182 - 38313003
Alignment:
| Q |
41 |
ttctctctcacatctcagctccagtggga---tcaacagtacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaa |
137 |
Q |
| |
|
||||||| ||||||||||||||||| ||| | |||| ||||||| ||||||| ||||| ||||| ||||||||||| ||| | |||||||| ||||| |
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| T |
38313182 |
ttctctcacacatctcagctccagtaggagggtaaacaagacagaagttgagaactttactatttaacttccaattcgcatcaacgaaatgagcagtcaa |
38313083 |
T |
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| Q |
138 |
acaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcc----tattaggaatggtagccaat |
213 |
Q |
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||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||| |
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| T |
38313082 |
acaaatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaat |
38313003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 38308541 - 38308423
Alignment:
| Q |
93 |
cttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatc |
192 |
Q |
| |
|
|||||| ||||| ||||||| |||| || |||||||||||| |||||||||||||| | ||||| || |||||||||| |||| |||||||||||| |
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| T |
38308541 |
cttactatttaacttccaatccgcgccaacaaaatgagcggataaacaaatataagtgccagtagtacaagattcccacaactcaaaggttaaagatatc |
38308442 |
T |
|
| Q |
193 |
ctattaggaatggtagcca |
211 |
Q |
| |
|
||| |||||||||||||| |
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| T |
38308441 |
ttataaggaatggtagcca |
38308423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 38320707 - 38320738
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcac |
51 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38320707 |
tggggaatagagaaaaagatcttctctctcac |
38320738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 38850806 - 38850924
Alignment:
| Q |
90 |
aaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagat |
189 |
Q |
| |
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||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||| ||||| || ||||||| |
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| T |
38850806 |
aaccttactatttaacttccaattcgcgtcaacaaaatgagcagtcaaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagat |
38850905 |
T |
|
| Q |
190 |
atcctattaggaatggtag |
208 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
38850906 |
atcctattaggaatggtag |
38850924 |
T |
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