View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16768_high_58 (Length: 228)
Name: NF16768_high_58
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 34745434 - 34745240
Alignment:
| Q |
15 |
actttgtccattttttggccaaagcatgagctacctgattcccttctctgtggatatgggtacacttacaagaaatggagctagctataatcatacagtt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34745434 |
actttgtccattttttggccaaagcatgagctacctggttcccttctctgtggatatgggtacacttacaagaaatggagctagctataatcatacagtt |
34745335 |
T |
|
| Q |
115 |
attccaccgatttcttagtccccaagggaccaacatgttatcttggaaggcctttgtcactaaactagaatccgtttctatccaaatgctatacc |
209 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34745334 |
attccaccgatttctaagtccccaagggaccaacatgttatcttggaaggcctttgtcactaaactagaatccgtttctatccaaatgctatacc |
34745240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University