View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_59 (Length: 227)
Name: NF16768_high_59
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 51114911 - 51114743
Alignment:
| Q |
18 |
aagaatgagtagtttgtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgcca |
117 |
Q |
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| T |
51114911 |
aagaatgagtagtcagtcaatagtttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgcca |
51114812 |
T |
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| Q |
118 |
attttcgatggaactttcaacacaacgaggaattagaagaatgttgattagttttaagatagtttcaca |
186 |
Q |
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| T |
51114811 |
attttcgatggaactttcaacacgacgaggaattagaagaatattgattagttttaagatagtttcaca |
51114743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 5768905 - 5768822
Alignment:
| Q |
51 |
caatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaacttt |
134 |
Q |
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| T |
5768905 |
caatatcaaacaaaggataacttcaaaataagaaacataatatgtagccataagcagaaagatgccaaatttccatggaacttt |
5768822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 1118765 - 1118657
Alignment:
| Q |
33 |
gtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaact |
132 |
Q |
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||||||| |||||||||| |||| ||||||||||||||||| | |||||||||||||||||| || | |||||||||||| |||||| |||||| | |
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| T |
1118765 |
gtcaatatcttcaaaaac-aataccagacaaagcataatttaagaataagaaacataatatgtgggtctcagcagaaagatgcatattttccatggaatt |
1118667 |
T |
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| Q |
133 |
ttcaacacaa |
142 |
Q |
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| T |
1118666 |
atcaacacaa |
1118657 |
T |
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