View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_6 (Length: 604)
Name: NF16768_high_6
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Original strand, 45319788 - 45320365
Alignment:
| Q |
11 |
catcatcaaggaagggccttaaacacattggacacggaactgtatctggaacactctcacatcaatcctcaatgaacagattcaggaaaaatatacagca |
110 |
Q |
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| T |
45319788 |
catcttcaaggaagggccttaaacacgttggacatggaactgtatctggaacactctcacatcaatcctcaatgaacagattcaggacaaatatacagca |
45319887 |
T |
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| Q |
111 |
taaagcgtgtactgtttcacgaccatcatcaacgttatcatttgattcctcatctaactcttctgtcagaaaacaaaatggtactacttctaggcccaac |
210 |
Q |
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| T |
45319888 |
taaagcgcgtactgtttcacgaccatcatcaacgttatcatttgattcctcatctaactcttctgtcagaaaacaaaatggtactacttctaggcccaac |
45319987 |
T |
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| Q |
211 |
aagacaggacgtaaacaaggtgaaaatgtgagggtagggtacaaaatcaggccaaagatgagcgcaatagttggggcagcaaataaagttattccatcta |
310 |
Q |
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| T |
45319988 |
aagacaggacgtaaacaaggtgaaaatgtgagggtagggtacaaaatcaggccaaagatgagcgcaatagttggggcagcaaataaagttattccatcta |
45320087 |
T |
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| Q |
311 |
ggaagttaacttttaggagaggaaaggttattgaaattcagccgcaaagcaacaacattccaaggagactcaaattcaagccggtacgcctgcttgatga |
410 |
Q |
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| T |
45320088 |
ggaagttaacttttaggagaggaaaggttattgaaattcagccgcaaagcaacaacattccaaggagactcaaattcaagccggtacgcctgcttgatga |
45320187 |
T |
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| Q |
411 |
tgaggtcaggaaagatgtaaatggaacaagaaaaaggatcatttccaataaagaagttgacggtggtgaggtaaatgctgcaaatataaaaactgagaaa |
510 |
Q |
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| T |
45320188 |
tgaggtcaggaaagatgtaaatggaacaagaaaaaggatcatttccaataaagaagttgacggtggtgaggtaaatgctgcaaatataaaaactgagaaa |
45320287 |
T |
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| Q |
511 |
gttgatctcaaacctcaaactatggaaagaggtaaaagcagaagttttgtgagaaaggctggtggtgtagatagaagc |
588 |
Q |
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| T |
45320288 |
gttgatctcaaacctcaaactatggaaagaggtaaaaacagaagttttgtgagaaaggttggtggtgtagatagaagc |
45320365 |
T |
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