View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16768_high_9 (Length: 519)

Name: NF16768_high_9
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16768_high_9
NF16768_high_9
[»] chr8 (2 HSPs)
chr8 (16-507)||(30524956-30525468)
chr8 (479-507)||(12704268-12704296)
[»] chr2 (2 HSPs)
chr2 (315-464)||(36201953-36202104)
chr2 (312-430)||(43829729-43829847)
[»] chr3 (5 HSPs)
chr3 (341-506)||(50197019-50197186)
chr3 (341-430)||(22312338-22312427)
chr3 (319-430)||(20490965-20491076)
chr3 (223-256)||(22312207-22312240)
chr3 (318-359)||(47446128-47446169)
[»] chr7 (7 HSPs)
chr7 (433-506)||(2911994-2912068)
chr7 (312-430)||(8745779-8745897)
chr7 (223-311)||(5473277-5473365)
chr7 (312-358)||(36496221-36496267)
chr7 (289-370)||(33804305-33804390)
chr7 (312-384)||(35035378-35035450)
chr7 (307-359)||(48113867-48113919)
[»] chr4 (7 HSPs)
chr4 (315-378)||(54137260-54137323)
chr4 (315-431)||(55240471-55240587)
chr4 (313-430)||(36165366-36165487)
chr4 (223-258)||(1460397-1460432)
chr4 (470-500)||(36165718-36165748)
chr4 (474-506)||(11785033-11785065)
chr4 (398-430)||(34542325-34542357)
[»] chr6 (2 HSPs)
chr6 (312-369)||(32406985-32407042)
chr6 (319-377)||(12425734-12425792)
[»] chr1 (8 HSPs)
chr1 (437-495)||(25685697-25685756)
chr1 (223-258)||(30602341-30602376)
chr1 (312-430)||(49293052-49293170)
chr1 (318-354)||(10199982-10200018)
chr1 (433-500)||(10645557-10645625)
chr1 (474-506)||(10645794-10645826)
chr1 (342-378)||(15265528-15265564)
chr1 (449-497)||(35689906-35689954)
[»] chr5 (3 HSPs)
chr5 (420-507)||(6423929-6424019)
chr5 (312-381)||(33408150-33408219)
chr5 (312-506)||(42042143-42042339)


Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 30524956 - 30525468
Alignment:
Q  16 gatgtttctgttttctgtgtggggaagacgtgtacagttgaagggaagacaaatagaaataattgggcatatgtttggagggggtatatgaattgaccta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30524956 gatgtttctgttttctgtgtggggaagacgtgtacagttgaagggaagacaaatagaaataattgggcatatgtttggatggggtatatgaattgaccta 30525055  T
Q  116 accacttgtgatacaatttgtgtgattttgtgttgttgtatgaatggacggggtttacctcttgagcatctcatgttctcctccgacttttgttagtgag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||    
T  30525056 accacttgtgatacaatttgtgtgattttgtgttgttgtatgaatggacggggtttacctcttgagcatctcatgtt---ctccgacttttgttagtcag 30525152  T
Q  216 taatgttaagttggttttgaagtagtttgtagtttgttatttgctctatattgtttaggttctagtgctgtttagtgtataaatatgtttgagtac---- 311  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||        
T  30525153 taatgttaagttgcttttgaagttgtttgtagtttgttatttgctctacattatttaggttctagtgttgtttagtgtataaatatgtttgagtactctc 30525252  T
Q  312 --------agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgc 403  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  30525253 attctttgagctagcttttgggatgagatacaagcacatttaacatggtatcagagtcgagttaaggattgcaatatggaagctggacccaagtccacgc 30525352  T
Q  404 tagacatgagagtgggtg------------ttgaagttgtcgtagtttgttatttgtccacattgttcagattcctgagctattgagtgtataaatatgt 491  Q
    ||||| ||||||| ||||            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30525353 tagacgtgagagtaggtgatgaagttcgttttgaagttgtcgtagtttgttatttgtccacattgttcaggttcctgagctattgagtgtataaatatgt 30525452  T
Q  492 ttgagtaccttcatct 507  Q
    ||||||||||||||||    
T  30525453 ttgagtaccttcatct 30525468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 507
Target Start/End: Original strand, 12704268 - 12704296
Alignment:
Q  479 tgtataaatatgtttgagtaccttcatct 507  Q
    |||||||||||||||||||||||||||||    
T  12704268 tgtataaatatgtttgagtaccttcatct 12704296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 464
Target Start/End: Original strand, 36201953 - 36202104
Alignment:
Q  315 tagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatgaga 414  Q
    |||||||||||| ||||| ||||||  ||||||||||||||||||||  |||||| ||| |||| |||||  ||||||||||  |||| || || |||||    
T  36201953 tagcttttgggaggagattcaagcatgtttaacatggtatcagagtcgggttaagaattacaatgtggaaattggactcaagctcacgttaaacgtgaga 36202052  T
Q  415 gtgggtgttgaagttg-tcgtagtttgttatttgtc-cacattgttcagatt 464  Q
    |||  ||||||| ||| | |||||||||||||| || |||||||||||||||    
T  36202053 gtgaatgttgaaattgtttgtagtttgttatttatcacacattgttcagatt 36202104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 430
Target Start/End: Complemental strand, 43829847 - 43829729
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatg 411  Q
    |||||||| ||||||||||||  |||| |||| |||||||||||||||||  ||||||||||||| | ||| || |||| ||| | ||||  ||||| ||    
T  43829847 agctagctgttgggatgagatcaaagctcattaaacatggtatcagagtcgggttaaggattgcagtgtgggagttggattcaggcccacattagacgtg 43829748  T
Q  412 agagtgggtgttgaagttg 430  Q
    || ||||||||||||||||    
T  43829747 agggtgggtgttgaagttg 43829729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 50197019 - 50197186
Alignment:
Q  341 atttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatgagagtgggtgttgaagttg-tcgtagttt 439  Q
    |||||||||||||||| ||||   |||||||||||||| |||||  |||||| |   |||| ||||   ||||||||||||||||||||| |  ||||||    
T  50197019 atttaacatggtatcatagtcggattaaggattgcaatgtggaaattggacttagacccacactaggggtgagagtgggtgttgaagttgtttatagttt 50197118  T
Q  440 gttatttgt-ccacattgttcagattcctgagctattgagtgtataaatatgtttgagtaccttcatc 506  Q
    ||||||||| |||||||| |||| |||  || || ||||||||||||||||| | ||||||| |||||    
T  50197119 gttatttgtcccacattgctcaggttcacgaactgttgagtgtataaatatggtcgagtaccctcatc 50197186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 22312338 - 22312427
Alignment:
Q  341 atttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatgagagtgggtgttgaagttg 430  Q
    |||||||||||||||||||||  ||||| ||||||||| || ||  ||||||||  |||||||||||| || ||||| ||||||||||||    
T  22312338 atttaacatggtatcagagtcgggttaaagattgcaatgtgcaaattggactcagatccacgctagacgtgtgagtgagtgttgaagttg 22312427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 430
Target Start/End: Original strand, 20490965 - 20491076
Alignment:
Q  319 ttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatgagagtgg 418  Q
    |||||||||||||| ||||| |||||||||||||||||||| || ||||| |||| |||| ||| |  ||||  || | |||| |||||| |||| ||||    
T  20490965 ttttgggatgagatccaagctcatttaacatggtatcagagccaggttaatgattacaatgtgggaattggatccaggcccacactagacgtgagggtgg 20491064  T
Q  419 gtgttgaagttg 430  Q
    || |||||||||    
T  20491065 gtattgaagttg 20491076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 22312207 - 22312240
Alignment:
Q  223 aagttggttttgaagtagtttgtagtttgttatt 256  Q
    |||||||||||||||| |||||||||||||||||    
T  22312207 aagttggttttgaagttgtttgtagtttgttatt 22312240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 47446128 - 47446169
Alignment:
Q  318 cttttgggatgagatacaagcacatttaacatggtatcagag 359  Q
    ||||||||||||||| ||||| || |||||||||||||||||    
T  47446128 cttttgggatgagatccaagcccaattaacatggtatcagag 47446169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 2912068 - 2911994
Alignment:
Q  433 gtagtttgttatttgtcc-acattgttcagattcctgagctattgagtgtataaatatgtttgagtaccttcatc 506  Q
    |||||||||||||||||| |||| | |||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  2912068 gtagtttgttatttgtcccacatggatcaggttcctgggctattgagtgtataaatatgtttgaataccttcatc 2911994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 430
Target Start/End: Complemental strand, 8745897 - 8745779
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatg 411  Q
    ||||| ||||||||||||||| ||||| ||||||||||| |||||||||   |||||||||| || ||||  |  |||||||| | ||||||||| ||||    
T  8745897 agctaacttttgggatgagatccaagctcatttaacatgatatcagagttgggttaaggattccagtatgtgaattggactcagggccacgctaggcatg 8745798  T
Q  412 agagtgggtgttgaagttg 430  Q
    || ||| ||||| ||||||    
T  8745797 agggtgagtgttaaagttg 8745779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 5473277 - 5473365
Alignment:
Q  223 aagttggttttgaagtagtttgtagtttgttatttgctctatattgtttaggttctagtgctgtttagtgtataaatatgtttgagtac 311  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||| | | ||||| | | || | | ||||||||||||| |||||||    
T  5473277 aagttggttttgaagttgtttgtagtttgttatttgttatatattgctcaagttctcgggttgctaaatgtataaatatgtatgagtac 5473365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 36496267 - 36496221
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcaga 358  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  36496267 agctagcttttgggatgagattcaagcccatttcacatggtatcaga 36496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 33804390 - 33804305
Alignment:
Q  289 agtgtataaatatgtttgagta----cagctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaagg 370  Q
    |||||||||||||| |||||||    || ||| ||||||||||||||| || ||  ||||||||||||||||||||  ||||||||    
T  33804390 agtgtataaatatgattgagtatcatcaactaacttttgggatgagattcatgcctatttaacatggtatcagagttgagttaagg 33804305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 35035450 - 35035378
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaa 384  Q
    ||||||||||||||||||||| ||| | |||| ||||| |||||||||  | ||||| || |||||| |||||    
T  35035450 agctagcttttgggatgagatccaaacccattgaacatagtatcagagctaggttaaagaatgcaatgtggaa 35035378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 48113867 - 48113919
Alignment:
Q  307 agtacagctagcttttgggatgagatacaagcacatttaacatggtatcagag 359  Q
    |||| |||| |||||||||||||||| ||||| |||| | |||||||||||||    
T  48113867 agtagagctggcttttgggatgagatccaagcccattcaccatggtatcagag 48113919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 54137323 - 54137260
Alignment:
Q  315 tagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaat 378  Q
    |||||||||||||||||| ||||| || |||||||||||||||||||  |||||||||||||||    
T  54137323 tagcttttgggatgagattcaagctcaattaacatggtatcagagtcgggttaaggattgcaat 54137260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 55240471 - 55240587
Alignment:
Q  315 tagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatgaga 414  Q
    |||||||||||||||||| |||||  |||||||||||||| ||||||  ||||| ||||||||| | | |  ||||||||||  |  ||||||| ||||     
T  55240471 tagcttttgggatgagattcaagccaatttaacatggtattagagtcgggttaaagattgcaatgtaggaattggactcaagctcttgctagacgtgagg 55240570  T
Q  415 gtgggtgttgaagttgt 431  Q
    |||| ||||||||||||    
T  55240571 gtggatgttgaagttgt 55240587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 430
Target Start/End: Complemental strand, 36165487 - 36165366
Alignment:
Q  313 gctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatgg----aagctggactcaagtccacgctagac 408  Q
    ||||| |||||||||||||| ||||| |||||| ||||||| || |  || ||||||||||||||| |||     |  |||||||||| ||||||||| |    
T  36165487 gctagattttgggatgagatccaagcccatttaccatggtaacaaaaccaggttaaggattgcaatgtgggacagaattggactcaagcccacgctaggc 36165388  T
Q  409 atgagagtgggtgttgaagttg 430  Q
     |||| ||||||||||||||||    
T  36165387 gtgagggtgggtgttgaagttg 36165366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 1460397 - 1460432
Alignment:
Q  223 aagttggttttgaagtagtttgtagtttgttatttg 258  Q
    |||||||||||||||| |||||||||||||||||||    
T  1460397 aagttggttttgaagttgtttgtagtttgttatttg 1460432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 500
Target Start/End: Complemental strand, 36165748 - 36165718
Alignment:
Q  470 gctattgagtgtataaatatgtttgagtacc 500  Q
    |||||||||||||||||||||||||||||||    
T  36165748 gctattgagtgtataaatatgtttgagtacc 36165718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 11785033 - 11785065
Alignment:
Q  474 ttgagtgtataaatatgtttgagtaccttcatc 506  Q
    ||||||||||||||||||||||||||| |||||    
T  11785033 ttgagtgtataaatatgtttgagtaccctcatc 11785065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 430
Target Start/End: Complemental strand, 34542357 - 34542325
Alignment:
Q  398 ccacgctagacatgagagtgggtgttgaagttg 430  Q
    ||||||||| |||||||||||||||||||||||    
T  34542357 ccacgctaggcatgagagtgggtgttgaagttg 34542325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 32407042 - 32406985
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaag 369  Q
    ||||||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||    
T  32407042 agctagcttttgggatgagatccaaactcatttaacatggtatcagagtcaggttaag 32406985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 12425734 - 12425792
Alignment:
Q  319 ttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaa 377  Q
    ||||| |||||||| ||| | |||||||||||||||||||||| |||| || |||||||    
T  12425734 ttttgtgatgagattcaatcccatttaacatggtatcagagtcgagttgagtattgcaa 12425792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 25685697 - 25685756
Alignment:
Q  437 tttgttatttgtc-cacattgttcagattcctgagctattgagtgtataaatatgtttga 495  Q
    ||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||    
T  25685697 tttgttatttgtctcacattgttcagatttctgagttgttgagtgtataaatatgtttga 25685756  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 30602341 - 30602376
Alignment:
Q  223 aagttggttttgaagtagtttgtagtttgttatttg 258  Q
    |||||||||||||||| |||||||||||||||||||    
T  30602341 aagttggttttgaagttgtttgtagtttgttatttg 30602376  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 430
Target Start/End: Original strand, 49293052 - 49293170
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatg 411  Q
    |||||||||||| |||||||| || ||| |||| || | |||| ||||||  ||||||||| ||||| ||| |  |||||||||  ||| | ||||| ||    
T  49293052 agctagcttttgagatgagattcaggcatattttacgtcgtattagagtcgggttaaggatcgcaatgtgggaattggactcaaacccatgatagacgtg 49293151  T
Q  412 agagtgggtgttgaagttg 430  Q
    || ||| ||||||||||||    
T  49293152 agggtgagtgttgaagttg 49293170  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 10199982 - 10200018
Alignment:
Q  318 cttttgggatgagatacaagcacatttaacatggtat 354  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  10199982 cttttgggatgagattcaagcccatttaacatggtat 10200018  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 10645557 - 10645625
Alignment:
Q  433 gtagtttgttatttgtcc-acattgttcagattcctgagctattgagtgtataaatatgtttgagtacc 500  Q
    |||||||||| ||||||| |||| | |||| |||| | | ||||||||||||||||||| |||||||||    
T  10645557 gtagtttgttgtttgtcccacatcgctcaggttcccgcggtattgagtgtataaatatgcttgagtacc 10645625  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 10645794 - 10645826
Alignment:
Q  474 ttgagtgtataaatatgtttgagtaccttcatc 506  Q
    ||||||||||||||||||||||||||| |||||    
T  10645794 ttgagtgtataaatatgtttgagtaccctcatc 10645826  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 15265528 - 15265564
Alignment:
Q  342 tttaacatggtatcagagtcaagttaaggattgcaat 378  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  15265528 tttaacatggtatcagagttaagttaaggattacaat 15265564  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 35689954 - 35689906
Alignment:
Q  449 ccacattgttcagattcctgagctattgagtgtataaatatgtttgagt 497  Q
    ||||||||||| |||| | | ||| ||||||||||||||||||||||||    
T  35689954 ccacattgttcggatttccgggctgttgagtgtataaatatgtttgagt 35689906  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 507
Target Start/End: Original strand, 6423929 - 6424019
Alignment:
Q  420 tgttgaagttgtc-gtagtttgttatttgtc-cacattgttcagattcctg-agctattgagtgtataaatatgtttgagtaccttcatct 507  Q
    ||||||||||||| ||||||||||||||||| |||||||||||  || ||  |||| ||||||||||||||||||||||||| | ||||||    
T  6423929 tgttgaagttgtctgtagtttgttatttgtctcacattgttcaagtttctccagctgttgagtgtataaatatgtttgagtatcatcatct 6424019  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 33408219 - 33408150
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatg 381  Q
    ||||| ||||||||||||||| ||| | ||||||||||||||||||||||   |||| ||||||||||||    
T  33408219 agctaacttttgggatgagattcaaactcatttaacatggtatcagagtcggtttaatgattgcaatatg 33408150  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 506
Target Start/End: Original strand, 42042143 - 42042339
Alignment:
Q  312 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcaagttaaggattgcaatatggaagctggactcaagtccacgctagacatg 411  Q
    |||||| |||||||||||||| ||| |  |||||||||||||||||||||  |||||||||||| || ||| |  ||| | |||| | ||||||  |  |    
T  42042143 agctagtttttgggatgagatccaaacttatttaacatggtatcagagtcgggttaaggattgcgatgtgggaattgggcacaagcctacgctaagcgcg 42042242  T
Q  412 agagtgggtgttgaagttg-tcgtagtttgttatttgtc-cacattgttcagattcctgagctattgagtgtataaatatgtttgagtaccttcatc 506  Q
    || |||||||| ||||||| |  ||||||||| || ||| |||||||   || ||||    || ||||||||||||||||||||||||| |||||||    
T  42042243 agggtgggtgtcgaagttgtttatagtttgttgttagtcacacattgcaaaggttcccagactgttgagtgtataaatatgtttgagtatcttcatc 42042339  T

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