View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_1 (Length: 748)
Name: NF16768_low_1
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 1 - 738
Target Start/End: Original strand, 29208333 - 29209070
Alignment:
| Q |
1 |
aatgacgctatatatagcaccgttgcgtagctgagtttgaacaaaaactattttttgcaattagaaattatgttagagggtactgnnnnnnntctaggta |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
29208333 |
aatgacgctatatatagcactgttgcgtagctgagtttgaacaaaaactattttttgcaattagcaattatgttagagggtactgaaaaaaatctaggta |
29208432 |
T |
|
| Q |
101 |
tctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaattgcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29208433 |
tctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaaatgcaaaa |
29208532 |
T |
|
| Q |
201 |
gaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208533 |
gaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagat |
29208632 |
T |
|
| Q |
301 |
ttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaaccgttgttgaattgagggggctatataaagagtgagaaaagatgaagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208633 |
ttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaaccgttgttgaattgagggggctatataaagagtgagaaaagatgaagtt |
29208732 |
T |
|
| Q |
401 |
tggaggttggtaactgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctctaggatttgcatgctctcttgcaccaaactttctgat |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208733 |
tggaggttggtaactgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctctaggatttgcatgctctcttgcaccaaactttctgat |
29208832 |
T |
|
| Q |
501 |
taaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagcttaagtgagggataatccatggttcacattaattaa |
600 |
Q |
| |
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| T |
29208833 |
taaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagcttaagtgagggataatccatggttcacattaattaa |
29208932 |
T |
|
| Q |
601 |
tccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgttatagttgattggaattcaataattttctatgctct |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208933 |
tccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgttatagttgattggaattcaataattttctatgctct |
29209032 |
T |
|
| Q |
701 |
attaagttttgttttagaattaatgtttgttgtctctg |
738 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29209033 |
attaagttttgttttagaattaatgtttgttgtctctg |
29209070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 6e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 282 - 548
Target Start/End: Complemental strand, 38377782 - 38377513
Alignment:
| Q |
282 |
tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaac----cgttgttgaattgagggggctatat |
377 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||||||||| | ||||||||||||| | | |||| ||||| ||||| |||||| |
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| T |
38377782 |
tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtggacttgatgtgtaactatgcagctagtcgttattgaaca-aggggactatat |
38377684 |
T |
|
| Q |
378 |
aaa--gagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaat--ttaatttctgttgctacatcacaaacatgctctaggatttgc |
473 |
Q |
| |
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| | ||||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
38377683 |
atatagagtgagaaaatatgaagtttggaggttggtaactgtctgaaaggttcaatatttaatttctgttgctacatca---acatgctctaggatttgc |
38377587 |
T |
|
| Q |
474 |
atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttcctt |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
38377586 |
atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttatcaatcc-tattatgttcctt |
38377513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 38378240 - 38378088
Alignment:
| Q |
93 |
tctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaa |
192 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||| ||||||||||||||||| || |||||||||||||| |
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| T |
38378240 |
tctaggtatctcaccattcctttagaatcaataatactccaatgagatgaagactgtgaagtgttcttgacaaacttttcaccgcagaaaattaaggaaa |
38378141 |
T |
|
| Q |
193 |
ttgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa |
244 |
Q |
| |
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|||||| |||| | ||||||||||||| |||||||||||||| |||||||| |
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| T |
38378140 |
atgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa |
38378088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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