View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_11 (Length: 513)
Name: NF16768_low_11
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 168 - 506
Target Start/End: Original strand, 42032426 - 42032773
Alignment:
| Q |
168 |
ggtagaccaaagtgaaatcaaataaatagttaagagactaaaacactaatgtattcgaa----------agaccttacaaacattttgaacaaaataaat |
257 |
Q |
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| T |
42032426 |
ggtagagcaaagtgaaatcaaataaatagttaagagattaaaacactaatgtattcgaagatccaaaaaagaccttacaaacattttgaacaaaataaat |
42032525 |
T |
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| Q |
258 |
tgtgtttttatttctacaaaaaagacaatgtttgatgnnnnnnnaagaagtcaaactagcctactaaaattggcaccggtgagaatcgaaaagagaacac |
357 |
Q |
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| T |
42032526 |
tgtgtttttatttctacaaaaaagacaatgtttgatgtttttttaagaagtcaaactagcctactaaaattggcaccggtgagaatcgaaaagagaacac |
42032625 |
T |
|
| Q |
358 |
tcaaatatcgcaaaccaacaacaccagaccaacacaaatgggttcataatgtttggatgttatttaatgatgttaaaagagattatggtcgacggggtgt |
457 |
Q |
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| T |
42032626 |
tcaaatatcg-aaaccaacaacaccagaccaacacaaatgggttcataatgtttggatgttatttaacgatgttaaaagagattatggtcgacggggtgt |
42032724 |
T |
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| Q |
458 |
tatatggaattcatttggtggaggagctgggtgtatgtagtgatgatgt |
506 |
Q |
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| T |
42032725 |
tatatggaattcatttggtggaggagctgagtgtatgtagtgatgatgt |
42032773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 42032298 - 42032363
Alignment:
| Q |
40 |
aaggggatgaagaaaagaggaggaaaatggttggttataagatatagtaatatgcaagatccaatg |
105 |
Q |
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| T |
42032298 |
aaggggatgaagaaaagaggaggaaaatggttggttataagatatagtaatatgcaagatccaatg |
42032363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 44745944 - 44745989
Alignment:
| Q |
302 |
aagaagtcaaactagcctactaaaattggcaccggtgagaatcgaa |
347 |
Q |
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| T |
44745944 |
aagaagccaaactagcctaccaaaattggcactggggagaatcgaa |
44745989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 6127949 - 6127994
Alignment:
| Q |
302 |
aagaagtcaaactagcctactaaaattggcaccggtgagaatcgaa |
347 |
Q |
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| T |
6127949 |
aagaagccaaactagcccaccaaaattggcaccggggagaatcgaa |
6127994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 32106680 - 32106636
Alignment:
| Q |
302 |
aagaagtcaaactagcctactaaaattggcaccggtgagaatcga |
346 |
Q |
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| T |
32106680 |
aagaagccaaactagcccactgaaattggcaccggagagaatcga |
32106636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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