View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_13 (Length: 499)
Name: NF16768_low_13
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Original strand, 20141093 - 20141556
Alignment:
| Q |
13 |
cagaggcctttctctgtgctcctgaaaccttaggagaacggcattctcgactacggtttctcttagtttgcatcttcactttgagttatgctccacggcc |
112 |
Q |
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| T |
20141093 |
cagaggcctttctctgtgctcctgaaaccttaggagaacagcattctcgactacggtttctcctagtttgcatcttcactttgagttatgctccacggcc |
20141192 |
T |
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| Q |
113 |
taataaagcagcaaataattatcctgatgtggaaatcaaaatcagtaagctcttgcagcaacaatcacattcagaccagcacatatggaaagtttaacaa |
212 |
Q |
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| T |
20141193 |
taataaagcagcaaataattatcctgatgtggaaatcaaaatcagtaagctcttgcagcaacaatcacattcagaccagcacatatggaaagtttaacaa |
20141292 |
T |
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| Q |
213 |
gattcat----ttgagaaaatattattgaattcattgattacaaaggatatgagtgcatgtatatatacaatgtgaaaacaaaataattgaaaggaaaat |
308 |
Q |
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| T |
20141293 |
gattgattgaattgagaaaatattattgaattcattgattagagtggatatgagtacatgtatatatacaatgtgaaaaccaaataattgaagggaaaat |
20141392 |
T |
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| Q |
309 |
tcatataagcaactaactgatctataactacccttaaccaatcataactaactataaccaaaagttagttattagctaaaataacggttgcggtcttgta |
408 |
Q |
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| T |
20141393 |
tcatctaagcaactaactgatctataactacccttaaccaatcataactaactataaccaaaagttagt-------tagaataacggtcgcggtcttgta |
20141485 |
T |
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| Q |
409 |
taggattccgcgattttggctgttgtgaaggatttgtgttatggattacgattgtcatggtgtgagttaatca |
481 |
Q |
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| T |
20141486 |
taagattctacgatttcagttgttgcgaagga--tgtgttatggattgcgattgtcatggtgtgaattaatca |
20141556 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 38598209 - 38598264
Alignment:
| Q |
135 |
cctgatgtggaaatcaaaatcagtaagctcttgcagcaacaatcacattcagacca |
190 |
Q |
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| T |
38598209 |
cctgatgtgaaaatcaaaatctataagctctcgcagcaagaatcgcattcagacca |
38598264 |
T |
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