View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_16 (Length: 463)
Name: NF16768_low_16
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Complemental strand, 28035941 - 28035510
Alignment:
| Q |
11 |
gagtagcaaagggagagaatttgaagatcctgaaacaaaggcacaaatgaaagcaatggcagctagagctttatggcaattgtgtagaagaaatgttact |
110 |
Q |
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| T |
28035941 |
gagtatcaaagggagagaatttgaagatcctgaaacaaaggcacaaatgaaagcaatggcagctagagctttatggcaattgtgtagaagaaatgttact |
28035842 |
T |
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| Q |
111 |
atttgtcatacaattacagaatcaagagctcttttgtgtttcgcggttttgttggaaaagggtacagatgatgtgcaacattattcagcaatggctttga |
210 |
Q |
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| T |
28035841 |
atttgtcatacaattacagaatcaagagctcttttgtgttttgcggttttgttggaaaagggtactgatgatgtgcaacattattcagcaatggctttga |
28035742 |
T |
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| Q |
211 |
tggaaataacatctgtggcagcagaacatgcagaattgagacgctctgctttcaaaccaactgcccctgctgcaaaagctgtggtggaacagtttctcaa |
310 |
Q |
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| T |
28035741 |
tggaaataacatctgtggcagcagaacatgcagaattgagacgttctgctttcaaaccaactgcccctgctgcaaaagctgtggtggaacagtttctcaa |
28035642 |
T |
|
| Q |
311 |
agttgtcgaaaaaggtgactccgaggatttgctcataccttgtgttaaagctattggtaacttagcgaggacttttagagcaactgaaacaagattcatt |
410 |
Q |
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| T |
28035641 |
agttgttgaaaaaggtgactccgaggatttgctcataccttgtgttaaagctattggtaacttagcaaggacttttagagcaactgaaacaagattcatt |
28035542 |
T |
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| Q |
411 |
gcgccattggtgaagttgctcgatgaaacaga |
442 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28035541 |
gcgccattggtgaagttgctcgatgaaacaga |
28035510 |
T |
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