View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_17 (Length: 459)
Name: NF16768_low_17
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 133 - 443
Target Start/End: Complemental strand, 33734848 - 33734537
Alignment:
| Q |
133 |
ttgaacttgtgggtgggcacattgtttagtttgagcataacacaatattggagagagacaaaagactgttaagttgcgacttaagcacttaagggaagat |
232 |
Q |
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| T |
33734848 |
ttgaacttgtgggtgggcacattgtttagtttgagcataacaaaatattggagagggacaaaagagtgttaacttgcgacttaagcactcaagggaagat |
33734749 |
T |
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| Q |
233 |
tagtctaatagtctatctaaagaatttatgtttgtgaaggtacttcgtggaactatgt---aataaatgtcataattatgtggttttcataaaggtcgaa |
329 |
Q |
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| T |
33734748 |
tagtctagtagtcaatctaaagaatttatgtttgtgaaggtacttcgtggaactatgtcagaacaaatgtcataattatgtggttttcataaaggtcgaa |
33734649 |
T |
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| Q |
330 |
catttgtcaaggtttaaagagtctttacggaataactataacaagttatccacaaacaaatttatcacttaacattaggaaattttataaacaaagaaat |
429 |
Q |
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||||| | ||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |
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| T |
33734648 |
catttattaaggtttaaagagtctttatggaagaactataacaaattatccacaaacaaaattatcacttaacattagaaaattttataaac--agaaat |
33734551 |
T |
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| Q |
430 |
tagaatgtacagac |
443 |
Q |
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||||||||| |||| |
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| T |
33734550 |
tagaatgtagagac |
33734537 |
T |
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