View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_19 (Length: 427)
Name: NF16768_low_19
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 20689620 - 20689226
Alignment:
| Q |
17 |
aaatgagacatgaactacttataatttggttatgttctaataatttcatgccaaggctatttttcttcattccctttatgacaccaagagtatgagacgt |
116 |
Q |
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| T |
20689620 |
aaatgagacatgaactacttataatttggttatgttctaataatttcatgccaaggctatttttcttcattccctttatgacaccaagagtatgagacgt |
20689521 |
T |
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| Q |
117 |
tagttatcattagcgaatatattttttactttgtttcagatcacgaaagccttgagaggtcttaaggtaagattctctcgcggagagatcataaggagtt |
216 |
Q |
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| T |
20689520 |
tagttatcattagcgaatatattttttactttgtttcagatcacgaaagccttgagaggtcttaaggtaagattctctcgcggagagatcataaggagtt |
20689421 |
T |
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| Q |
217 |
acaaggtgaccggtgtctcaaaagagccactcagagacctaacgtgagtaactttattttctttaccattttagttattccttagacgttggagtaaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20689420 |
acaaggtgaccggtgtctcaaaagagccactcagagacctaacgtgagtaactttattttctttaccattttagttattccttagacgttggagtaaatt |
20689321 |
T |
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| Q |
317 |
gtgtctaatgtgtaatgcttaaataggctacttatctacttgagggaaaggtgttgtgtcctccttggctaagctttattttaacaactttaggcttcat |
416 |
Q |
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| T |
20689320 |
gtgtctaatgtgt---------ataggctacttatctacttgagggaaagg---tgtgtcctccttgcctaagctttattttaacaactttaggcttgat |
20689233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 20665136 - 20665012
Alignment:
| Q |
152 |
tcagatcacgaaagccttgagaggtcttaaggtaagattctctcgcggagagatcataaggagttacaaggtgaccggtgtctcaaaagagccactcaga |
251 |
Q |
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|||||||| |||||||||||||||| ||| ||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20665136 |
tcagatcaagaaagccttgagaggtattagggtaagaacatctcacggaggtaacataaggagttacaaggtgaccggtgtctcaaaagagcccctcaga |
20665037 |
T |
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| Q |
252 |
gacctaacgtgagtaactttatttt |
276 |
Q |
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|| |||| ||||| |||||| |||| |
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| T |
20665036 |
gatctaatgtgagcaactttttttt |
20665012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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