View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_2 (Length: 633)
Name: NF16768_low_2
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_2 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold1657 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Complemental strand, 73108 - 72503
Alignment:
| Q |
18 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73108 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
73009 |
T |
|
| Q |
118 |
atgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatcatgtattttgaattctctcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
73008 |
atgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaattggttttagaatttcaagataaaatgagatcatgtcttttgaatt--ctcta |
72911 |
T |
|
| Q |
218 |
ttgttcgttgttcagtaaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatc |
317 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
72910 |
ttgctcgttgttcaataaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttcagatcaatctcttgactcggaatc |
72811 |
T |
|
| Q |
318 |
ctcttcttataaggttacaatccatttaggtgaatttgtaacagttgaagggtttactagaacgttaattcttagatcataacctagcaatcatctatct |
417 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
72810 |
ctcttc---taaggttacaatccatttaggtgaatttgtaacagttgaagggtttactagaacgttaattcttagatcataacctaacaatcatctatct |
72714 |
T |
|
| Q |
418 |
ctagtctgacccgttaattaaattaaccagaaatattaggtctaattcgatagttatagctagtagtcaattg--atgtagatttttgtgcatatttgat |
515 |
Q |
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| T |
72713 |
ctagtctgacccattaattaaattaaccagaaatattaggtctaattcgatagttatggctagtagtcaattgatatttagatttttctgcatatttgat |
72614 |
T |
|
| Q |
516 |
caagatataaaaagaattacacacaattaattatgaataaaactaggatagcaattgtattaaatcaagtttatacaatcacatgtttcaaacatcaatc |
615 |
Q |
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|||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
72613 |
caagatataaaaagaactacacataattaattaggaataaaactaggatagcaattgtattaaatcgagtttatacaatcacatgtttcaaatatcaatc |
72514 |
T |
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| Q |
616 |
gattcatctca |
626 |
Q |
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||||||||||| |
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| T |
72513 |
gattcatctca |
72503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 8437859 - 8438464
Alignment:
| Q |
18 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437859 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
8437958 |
T |
|
| Q |
118 |
atgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatcatgtattttgaattctctcta |
217 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||| |
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| T |
8437959 |
atgtgtaaaaatgggagggttacgataatttgtaaaatgcgagtaaatcggttttagaatttcaagataaaatgagatcatgtcttctgaat--tctcta |
8438056 |
T |
|
| Q |
218 |
ttgttcgttgttcagtaaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatc |
317 |
Q |
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| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
8438057 |
tagctcgttgtttagtaaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttctgataaatctcttgactcagaatc |
8438156 |
T |
|
| Q |
318 |
ctcttcttataaggttacaatccatttaggtgaatttgtaacagttgaagggtttactagaacgttaattcttagatcataacctagcaatcatctatct |
417 |
Q |
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|||||| ||| ||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8438157 |
ctcttc---taatgttacaatctatttagatgaatttgtaacagttgaaaggtttactagaacgttaattcttagatcataacctaacaatcatctatct |
8438253 |
T |
|
| Q |
418 |
ctagtctgacccgttaattaaattaaccagaaatattaggtctaattcgatagttatagctagtagtcaattg--atgtagatttttgtgcatatttgat |
515 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || || ||||||||||||||||||| |
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| T |
8438254 |
ctagtttgacccgttaattaaattaaccagaaatattaggtctaatttgatagttatggctagtagtcaattgatatttatatttttgtgcatatttgat |
8438353 |
T |
|
| Q |
516 |
caagatataaaaagaattacacacaattaattatgaataaaactaggatagcaattgtattaaatcaagtttatacaatcacatgtttcaaacatcaatc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8438354 |
caagatataaaaagaattacacacaattaattatgaataaaactaggatagcaattgtattaaatcgagtttatacaatcacatgtttcaaacatcaatc |
8438453 |
T |
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| Q |
616 |
gattcatctca |
626 |
Q |
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||||||||||| |
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| T |
8438454 |
gattcatctca |
8438464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 507 - 609
Target Start/End: Original strand, 26157075 - 26157172
Alignment:
| Q |
507 |
atatttgatcaagatataaaaagaattacacacaattaattatgaataaaactaggatagcaattgtattaaatcaagtttatacaatcacatgtttcaa |
606 |
Q |
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|||| |||||||||||||||||| ||||||| ||| ||||| | |||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
26157075 |
atatgtgatcaagatataaaaagcattacacgcaaataattct-----aaactaggatagtaattgtattaaatatagtttatacaatcacatggttcaa |
26157169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1657 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1657
Description:
Target: scaffold1657; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 609 - 702
Alignment:
| Q |
376 |
agaacgttaattcttagatcataacctagcaatcatctatctctagtctgacccgttaattaaattaaccagaaatattaggtctaattcgatagtta |
473 |
Q |
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|||||||||||| || |||||||||| |||||||||||| |||| ||||||||||| ||||||||||| |||||| || ||||| ||||||| |
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| T |
609 |
agaacgttaatttctatgtcataacctaacaatcatctatccctagactgacccgttag----attaaccagaattattagatccaattcaatagtta |
702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 21599331 - 21599282
Alignment:
| Q |
506 |
catatttgatcaagatataaaaagaattacacacaattaattatgaataa |
555 |
Q |
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||||||||||||||||| |||||| |||| |||||| ||||| ||||||| |
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| T |
21599331 |
catatttgatcaagatacaaaaagcattaaacacaagtaattttgaataa |
21599282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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