View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_24 (Length: 390)
Name: NF16768_low_24
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 39586830 - 39586472
Alignment:
| Q |
14 |
cacagataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
113 |
Q |
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| T |
39586830 |
cacaaataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
39586731 |
T |
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| Q |
114 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
213 |
Q |
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| T |
39586730 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
39586631 |
T |
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| Q |
214 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacac |
313 |
Q |
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| T |
39586630 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacac |
39586531 |
T |
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| Q |
314 |
ggaagaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggat |
372 |
Q |
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| T |
39586530 |
ggaagaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggat |
39586472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 36 - 372
Target Start/End: Complemental strand, 39553701 - 39553365
Alignment:
| Q |
36 |
aagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
135 |
Q |
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| T |
39553701 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
39553602 |
T |
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| Q |
136 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
235 |
Q |
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| T |
39553601 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
39553502 |
T |
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| Q |
236 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggacta |
335 |
Q |
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| T |
39553501 |
attagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtcta |
39553402 |
T |
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| Q |
336 |
attgattgggtggaagagcatcgaccggttccgggat |
372 |
Q |
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| T |
39553401 |
attgattgggtggaagagcatcgaccagttcctggat |
39553365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 39 - 372
Target Start/End: Complemental strand, 39543679 - 39543346
Alignment:
| Q |
39 |
cgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtgg |
138 |
Q |
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||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| |||||| |
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| T |
39543679 |
cgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtgg |
39543580 |
T |
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| Q |
139 |
ttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagatt |
238 |
Q |
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| T |
39543579 |
ttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatt |
39543480 |
T |
|
| Q |
239 |
aatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggactaatt |
338 |
Q |
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| T |
39543479 |
agcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaatt |
39543380 |
T |
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| Q |
339 |
gattgggtggaagagcatcgaccggttccgggat |
372 |
Q |
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| T |
39543379 |
gattgggtggaagagcatcgaccagttcctggat |
39543346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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