View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16768_low_25 (Length: 386)
Name: NF16768_low_25
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 20865432 - 20865065
Alignment:
| Q |
1 |
ccaccttggtcttggtttccggcac-actttgatccggaccagaagcctgatccgtggcagcatcctgctcagctgcagcctcaggttcagaaggtgcag |
99 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20865432 |
ccaccttggtcttggtttccggcaccaccttgatctggaccagaagcctgatccgtggcagcatcttgctcagctgcagcctcaggttcagaaggtgcag |
20865333 |
T |
|
| Q |
100 |
ccttcctccctcacaatctcatcaatcaatttttgaacagctttctgacccaaaatgttgaatggctcaccaactccaacgacagcaatggtgcatagga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20865332 |
ccttcctccctcacaatctcatcaatcaatttttgaacagctttctgacccaaaatgttgaatggctcaccaactccaacgacagcaatggtgcatacga |
20865233 |
T |
|
| Q |
200 |
agctcctgagcttttcacctaccaaggactccctaattgcaatgagtgcattcttgatcagatctttccgggaggaggctgcgaagttgttaactttgcg |
299 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20865232 |
agctcctgagcttttcacctagcaaggactccctaattgcaatgagtgcattcttgatcagatcttttcgggaggaggctgcgaagttgttaactttgcg |
20865133 |
T |
|
| Q |
300 |
ttccaaatatgtctttgcaggtagtgagcgtgaaccgattgcaaatgcctgatgttcaaaatagtttc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20865132 |
ttccaaatatgtctttgcaggtagtgagcgtgaaccgattgcaaatgcctgatgttcaaaatagtttc |
20865065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 3402110 - 3401735
Alignment:
| Q |
1 |
ccaccttggtcttggtttccggcac-actttgatccggaccagaagcctgatccgtggcagcatcctgctcagctgcagcctcaggttcagaaggtgcag |
99 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3402110 |
ccaccttggtcttggtttcgggcaccaccttgatctggaccagaagcctgatccgtggcagcatcctgctcagctgcagcctcaggttcagcaggtgcag |
3402011 |
T |
|
| Q |
100 |
c--cttcctccctcacaatctca------tcaatcaatttttgaacagctttctgacccaaaatgttgaatggctcaccaactccaacgacagcaatggt |
191 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| |||||||| || ||| ||||||||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
3402010 |
cttcttcctccctcacaatctcaaaagtatcaatcaattgttgaacagtttcttgatccaaaatgtggaatggctcatcaactccaaccacagcaatggt |
3401911 |
T |
|
| Q |
192 |
gcataggaagctcctgagcttttcacctaccaaggactccctaattgcaatgagtgcattcttgatcagatctttccgggaggaggctgcgaagttgtta |
291 |
Q |
| |
|
||||| | |||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
3401910 |
gcatacggagctcctgagctcttcaccttgcaaggactccctagttgcaatgagtgcatccttgatcagatcttcccgggaggaggctgtgaagttgtta |
3401811 |
T |
|
| Q |
292 |
actttgcgttccaaatatgtctttgcaggtagtgagcgtgaaccgattgcaaatgcctgatgttcaaaatagtttc |
367 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||| | ||||||| |||||||| |||||||||||||| |
|
|
| T |
3401810 |
aatttgcgttccaaatatgtctttgcagcttgtgagcgtgaatcaattgcaactgcctgatattcaaaatagtttc |
3401735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 7130509 - 7130874
Alignment:
| Q |
11 |
cttggtttccggcac-actttgatccggaccagaagcctgatccgtggcagcatcctgctcagctgcagcctcaggttcagaaggtgcagc--cttcctc |
107 |
Q |
| |
|
|||||||||| |||| || |||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7130509 |
cttggtttccagcaccaccttgatctgcaccagaagcctgatctgtagcagcatcctgctcagctgcagcctcaggttcagcaggtgcagtttcttcctc |
7130608 |
T |
|
| Q |
108 |
cctcacaatctca------tcaatcaatttttgaacagctttctgacccaaaatgttgaatggctcaccaactccaacgacagcaatggtgcataggaag |
201 |
Q |
| |
|
||||||||||||| || ||||| | |||||||| || |||| ||||||||| ||||||||||||||||||||| |||||||||||||||| | || |
|
|
| T |
7130609 |
cctcacaatctcaaaagtgtcgatcaactgttgaacagtttcctgatccaaaatgtggaatggctcaccaactccaaccacagcaatggtgcatacggag |
7130708 |
T |
|
| Q |
202 |
ctcctgagcttttcacctaccaaggactccctaattgcaatgagtgcattcttgatcagatctttccgggaggaggctgcgaagttgttaactttgcgtt |
301 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
7130709 |
ctcctgagcttttcaccttgcaaggactccctagttgcaatgagcgcatctttgatcagatcttcccgggaggaggctgtgaaattgttaaatttgcgtt |
7130808 |
T |
|
| Q |
302 |
ccaaatatgtctttgcaggtagtgagcgtgaaccgattgcaaatgcctgatgttcaaaatagtttc |
367 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7130809 |
ccaaatatgtctttgcagcttgtgagcgtgaaccgattgcaaatgcctgatattcaaaatagtttc |
7130874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 367
Target Start/End: Original strand, 53043441 - 53043776
Alignment:
| Q |
40 |
cagaagcctgatccgtggcagcatcctgctcagctgcagcctcaggttcagaaggtgcagcct--tcctccctcacaatctca------tcaatcaattt |
131 |
Q |
| |
|
||||| ||||||| || |||| |||| | |||||||| | || |||||||| ||||||| | |||||||||||||||||| || ||||| | |
|
|
| T |
53043441 |
cagaaccctgatctgtagcagaatcccgatcagctgctggcttaggttcagcaggtgcactttcctcctccctcacaatctcaaaagtatcgatcaactg |
53043540 |
T |
|
| Q |
132 |
ttgaacagctttctgacccaaaatgttgaatggctcaccaactccaacgacagcaatggtgcataggaagctcctgagcttttcacctaccaaggactcc |
231 |
Q |
| |
|
|||||| | || |||| ||||||||| |||||| |||||||| ||||| ||| |||||||||||| | |||||||||||||||| ||| |||||| ||| |
|
|
| T |
53043541 |
ttgaacggtttcctgatccaaaatgtggaatggttcaccaaccccaaccacaacaatggtgcatacggagctcctgagcttttctccttgcaaggattcc |
53043640 |
T |
|
| Q |
232 |
ctaattgcaatgagtgcattcttgatcagatctttccgggaggaggctgcgaagttgttaactttgcgttccaaatatgtctttgcaggtagtgagcgtg |
331 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| ||| || ||||||| ||||||||||| |||| ||||||||||||| |||||| | |||| || | |
|
|
| T |
53043641 |
ctagttgcaatgagtgcatctttgatcagatcttcccgcgatgaggctgtgaagttgttaaacttgcattccaaatatgtcattgcagcttgtgaacgcg |
53043740 |
T |
|
| Q |
332 |
aaccgattgcaaatgcctgatgttcaaaatagtttc |
367 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
53043741 |
aaccgattgcaaaagcctgatattcaaaatagtttc |
53043776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University