View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_27 (Length: 383)
Name: NF16768_low_27
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 50 - 367
Target Start/End: Original strand, 44626981 - 44627301
Alignment:
| Q |
50 |
ttgcaaggatcaatactacttactgttggtggacggcaacttgtcccctgaaaaagggaagnnnnnnnntcataaaaatgatgcaagtatatat----ta |
145 |
Q |
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| T |
44626981 |
ttgcaaggatcaatattacttactgttggtggacggcaacttgtcccctgaaaaagggaagaaaaaaaatcataaaaatgatgcaagtatatatatatta |
44627080 |
T |
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| Q |
146 |
ctataaaaagtatatatagtgtattatttaagtaacacaagttgaaatgttattaagttnnnnnnnnctatagtacttacgggtggtggatttcctatgc |
245 |
Q |
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| T |
44627081 |
ctataaaagatatatatagtgtattatttaagtaacaaaagttgaaatgttattaagttaaaaaaa-ctatagtacttacgggtggtggatttcctatgc |
44627179 |
T |
|
| Q |
246 |
aaggttgtttccaccacatagagcctcgaccatcaacagtcccttttccacttataattaaaccattcacaaatgagaaaccaatccatgtgtttatagg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627180 |
aaggttgtttccaccacatagagcctcgaccatcaacagtcccttttccacttataattaaaccattcacaaatgagaaaccaatccatgtgtttatagg |
44627279 |
T |
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| Q |
346 |
ggatcctgaatattccgatttt |
367 |
Q |
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|||||||||||||||||||||| |
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| T |
44627280 |
ggatcctgaatattccgatttt |
44627301 |
T |
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