View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_28 (Length: 372)
Name: NF16768_low_28
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 45341954 - 45341602
Alignment:
| Q |
1 |
attgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggtttgaggaagaaggtnnnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
45341954 |
attgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggtttgaggaagaaggtatcgacaacaacaacaac |
45341855 |
T |
|
| Q |
101 |
---tacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttccttagcttgtttaattctagtaccttttaaacttaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45341854 |
aactacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttcctt-----gtttaattctagtaccttttaaacttaa |
45341760 |
T |
|
| Q |
198 |
tcattacaaatttgtttgtatttattcattaaatttggaagaatgattatttttgttttctagagatttgtcttttccttgaatctgtgtgttcattttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45341759 |
tcattacaaatttgtttgtatttattcattaaatttgggagaatgattatttttcttttctagagatttgtctttttcttgaatctgtgtgttcattttg |
45341660 |
T |
|
| Q |
298 |
ctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagtt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45341659 |
ctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagtt |
45341602 |
T |
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