View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16768_low_3 (Length: 623)
Name: NF16768_low_3
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 33682761 - 33683355
Alignment:
| Q |
18 |
tttgaagcatagccaaaatcannnnnnnggaaaaatattcatattttttaacccaaccattttctactttatccaacaaatttgaaacaacagaaacttc |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33682761 |
tttgaagcatagccaaaatcatttttttggaaaaatattcatattttttaacccaaccattttctactttatccaacaaatttgaaacaacagaaacttc |
33682860 |
T |
|
| Q |
118 |
cttcttgtcctcccagtaaatagcgtgttgtatttgactaagaattagagacactgatgatactgaagaatgactaaaaatcaaatttagttttcctacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33682861 |
cttcttgtcctcccagtaaatagcgtgttgtatttgactaagaattagagacactgatgatactgaagaatgactaaaaatcaaatttagttttcctacc |
33682960 |
T |
|
| Q |
218 |
aataaacaacattcgcaaaacccatagtctggaatctcatggtctgaatatgaggaagatatctcaatcttagagagcaggcatggattttgagaatatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33682961 |
aataaacaacattcgcaaaacccatagtctggaatctcatggtctgaatatgaggaagatatctcaatcttacagagcaggcatggattttgagaatatt |
33683060 |
T |
|
| Q |
318 |
gaatctcactttcattaaaattactgcaaatttctttccaactcactaacaattttcccataaaacattcaatatgagaatcaaaagaatcttcagcttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33683061 |
gaatctcactttcattaaaattactgcaaatttctttccaactcactaacaattttcccataaaacattcaatatgagaatcaaaagaatcttcagcttg |
33683160 |
T |
|
| Q |
418 |
catggcgttagtttctgaaaggagaaacccttttgcaggttcaacccacataagtggtttgctatcacgactaccttcttttccctttccttcagtggta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33683161 |
catggcgttagtttctgaaaggagaaacccttttgcaggttcaacccacataagtggtttgctatcacgactaccttcttttccctttccttcagtggta |
33683260 |
T |
|
| Q |
518 |
taactatgcatactcaatatactttcttctgctgacattgttgaaggtgtgagttcaaccttcatttgcccgcatgataggaatactctctgctc |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33683261 |
taactatgcatactcaatatactttcttctgctgacattgttgaaggtgtgagttcaaccttcatttgcccgcatgataggaagactctctgctc |
33683355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University