View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_34 (Length: 342)
Name: NF16768_low_34
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 32723198 - 32722881
Alignment:
| Q |
9 |
gatgaatagaactgttatggaaaactttaggtgcttgatgtcaaattcaaatgtaacaacaccatagtcacataattatcttggcatgcttccaacctca |
108 |
Q |
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| T |
32723198 |
gatgaatagaactgttatggtaaaggttaggtgcttgatgttaaattcaaatgtaacaacaccatagtcacataattatcttggcatgcttcgaacctca |
32723099 |
T |
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| Q |
109 |
aattgatacttacgtaccggtccctggtacaatttggattggtttgcagaaattgtccttcaaaaattgaagaacatggcgatgtggatgatgatttgca |
208 |
Q |
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| T |
32723098 |
aattgatacttacgtaccggtccctggtacattttggattggtttgcagaaattgtcctacaaaaattgaagaacatggcgatgtggatgatgatttgca |
32722999 |
T |
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| Q |
209 |
aggctatctcttggaaagggttttgtcaaataatttccaagtgattattctgaagctatctacaacaaggaagctcgaaactagatagtcgccatgaatg |
308 |
Q |
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| T |
32722998 |
aggctatctcttggaaagggttttgtcaaataatttccaagtgattatactgaagctatcaacaacaaggaagctcgaaactagattgtcgccatgaatg |
32722899 |
T |
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| Q |
309 |
atgagttacactctctac |
326 |
Q |
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|||||||||||||||||| |
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| T |
32722898 |
atgagttacactctctac |
32722881 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 8164721 - 8164667
Alignment:
| Q |
72 |
atagtcacataattatcttggcatgcttccaacctcaaattgatacttacgtacc |
126 |
Q |
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| T |
8164721 |
atagtcacataattatcttgacatgctgcgaaccacaaattgatacctccgtacc |
8164667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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