View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16768_low_38 (Length: 306)
Name: NF16768_low_38
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 21853784 - 21853508
Alignment:
| Q |
14 |
cataggcacctggatataattcataaatggatactccaaaatgggtattaaatttgttggacgaaaaagtatgcaccctttgaactaggatcatggatac |
113 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21853784 |
cataggcacttgggtataattcataaatggatactccaaaatgggtattaaatttgttggacgaaaaagtatgcaccctttgaactagggtcatggatac |
21853685 |
T |
|
| Q |
114 |
accactggatatgacgataaagtgaagggaccagcaaaaaatttgaaaaagcacatgaacatataaaatggacatgttaaatgagttttgatgagaatta |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21853684 |
accactggatgtgacgataaagtgaagggaccagcaaaaaatttgaaaaagcacatgaacatataaaatggacatgttaaacgagttttgatgagaatta |
21853585 |
T |
|
| Q |
214 |
ttgttctatttctattattagatgttttatttggggtgacatttaacatgagaaatagtaaaactttcccaccatag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
21853584 |
ttgttctatttctattattagatgttttatttggggtggcatttaacatggaaaagggtaaaactttcccaccatag |
21853508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 21831849 - 21831741
Alignment:
| Q |
138 |
aagggaccagcaaaaaatttgaaaaagcacatgaacatataaaatggacatgttaaatgagttttgatgagaattattgttctatttctattattagatg |
237 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21831849 |
aagggaccaaccaaaaatttgaaaaagcacatgaacatataaaattgacacgttaaacaagttttgatgagaaccgttgttctatttctattattagatg |
21831750 |
T |
|
| Q |
238 |
ttttatttg |
246 |
Q |
| |
|
||||||||| |
|
|
| T |
21831749 |
ttttatttg |
21831741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 21839446 - 21839318
Alignment:
| Q |
66 |
tttgttggacgaaaaagtatgcaccctttgaactaggatcatggatacaccactggatatgacgataaagtgaagggaccagcaaaaaatttgaaaaagc |
165 |
Q |
| |
|
||||||||||||||||||||| |||| | || | ||| ||||||||| ||||| ||| ||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21839446 |
tttgttggacgaaaaagtatgaacccatagatccagggtcatggatatgccactagatgtgatgataaagtgaagggtccaacaaaaaatttgaaaaagc |
21839347 |
T |
|
| Q |
166 |
acatgaacatataaaatggacatgttaaa |
194 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
21839346 |
acatgaacatataaaatggacttgttaaa |
21839318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 21857532 - 21857412
Alignment:
| Q |
66 |
tttgttggacgaaaaagtatgcaccctttgaactaggatcatggatacaccactggatatgacgataaagtgaagggaccagcaaaaaatttgaaaaagc |
165 |
Q |
| |
|
||||||| ||||||||||||| |||| | || | |||||| |||||| ||||| ||| |||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
21857532 |
tttgttgaacgaaaaagtatgaacccatagatccaggatcgtggatatgccactagatgtgacgataaagtgaagggtccaacaaaaaaattgaaaaagc |
21857433 |
T |
|
| Q |
166 |
acatgaacatataaaatggac |
186 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21857432 |
acatgaacatataaaatggac |
21857412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University