View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_4 (Length: 611)
Name: NF16768_low_4
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Complemental strand, 5379475 - 5378888
Alignment:
| Q |
18 |
gtatgatagatatatgctccacaagaagactttcaatacccttagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataatt |
117 |
Q |
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| T |
5379475 |
gtatgatagatatatgctccacaagaagactttcaatacccttagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataatt |
5379376 |
T |
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| Q |
118 |
gtataataaagtcttgtaaccaaattcaaaccatatttatcacaatctctctcaagtttnnnnnnnctttctccaacgttcacagaatcttgtttcttta |
217 |
Q |
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| T |
5379375 |
gtataataaagtcttgtaaccaaattcaaaccatatttatcacaaactctctcaagtttaaaaaaactttctccaacgttcacagaatcttgtttcttta |
5379276 |
T |
|
| Q |
218 |
tttttatcacaaacataagactgattctctaacaagtacattcctaaagtagtatcaaataaacaagtgaagaatcagataccctttttgtggctcagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379275 |
tttttatcacaaacataagactgattctctaacaagtacattcctaaagtagtatcaaataaacaagtgaagaatcagataccctttttgtggctcagaa |
5379176 |
T |
|
| Q |
318 |
agcaagatgttttcacactagtagcagnnnnnnntgaagttcaaaatgcacctcaccctttcatcatttcactagctttgc-tttttgtgcctgccttca |
416 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5379175 |
agcaagatgttttcacactagtagcagccccccctgaagttcaaaatgcacctcaccctttcatcatttcactagctttgcttttttgtgcctgccttca |
5379076 |
T |
|
| Q |
417 |
agtttcaaatcacaaagccaagtcaaaacagttgaaaagaaacatcttcaaaaaaggtaaagttttgtgtgtgtgatttggatccgactaacttggctct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379075 |
agtttcaaatcacaaagccaagtcaaaacagttgaaaagaaacatcttcaaaaaaggtaaagttttgtgtgtgtgatttggatccgactaacttggctct |
5378976 |
T |
|
| Q |
517 |
agtacctnnnnnnngcaacttagaaggaaaaatccaccaataattccaaatttgctatacacaaatagtatcttgggaccctatgctt |
604 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5378975 |
agtacctaaaaaaagcaacttagaaggaaaaatccaccaataattccaaatttgctatacacaaatagtatcttgggaccctatgctt |
5378888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 43262185 - 43262218
Alignment:
| Q |
120 |
ataataaagtcttgtaaccaaattcaaaccatat |
153 |
Q |
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| T |
43262185 |
ataataaagtcttgtaaccaaatccaaaccatat |
43262218 |
T |
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