View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_43 (Length: 287)
Name: NF16768_low_43
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 3 - 272
Target Start/End: Complemental strand, 11196303 - 11196034
Alignment:
| Q |
3 |
tggagaagcatagggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaat |
102 |
Q |
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| T |
11196303 |
tggagaaacatggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaat |
11196204 |
T |
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| Q |
103 |
gaatattctaattgatgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcctgctgcggcaggt |
202 |
Q |
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| T |
11196203 |
gaatattctaattgatgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcctgctgcggcaggt |
11196104 |
T |
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| Q |
203 |
gttcctcagatcataatccgcttccaaatcgatgacgatggcatcttacacatctgtagcagggagaaat |
272 |
Q |
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| T |
11196103 |
gttcctcagatcataatccgcttccaaatcgatgacgatggcatcttacacatctgtagcagggagaaat |
11196034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 11155844 - 11155596
Alignment:
| Q |
15 |
gggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
114 |
Q |
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| T |
11155844 |
gggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
11155745 |
T |
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| Q |
115 |
tgatgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcctgctgcggcaggtgttcctcagatc |
214 |
Q |
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| T |
11155744 |
tcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttggaaaatttgttttggaaattcctccggctccggcaggtgttcctcagatt |
11155645 |
T |
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| Q |
215 |
ataatccgcttccaaatcgatgacgatggcatcttacacatctgtagca |
263 |
Q |
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| T |
11155644 |
aaaatcagcttccaaatcgatgatgatggcatcttagacgtttgtagca |
11155596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 11160706 - 11160566
Alignment:
| Q |
15 |
gggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
114 |
Q |
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| T |
11160706 |
gggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
11160607 |
T |
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| Q |
115 |
tgatgtttatgaaggtgagaggaaaataactagggacaaca |
155 |
Q |
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| T |
11160606 |
tcatgtttatgaaggtgagaggaaaataactagggaaaaca |
11160566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 11199287 - 11199147
Alignment:
| Q |
15 |
gggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
114 |
Q |
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||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11199287 |
gggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccacatgaatattctaat |
11199188 |
T |
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| Q |
115 |
tgatgtttatgaaggtgagaggaaaataactagggacaaca |
155 |
Q |
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| T |
11199187 |
tcatgtttatgaaggtgagaggaaaataactagggaaaaca |
11199147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 11132539 - 11132328
Alignment:
| Q |
38 |
cctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaattgatgtttatgaaggtgagagga |
137 |
Q |
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|||||||||||| ||||||| ||| |||||||| |||||||| |||||| | || ||||||| |||||| | ||| ||||||| || ||||| || | |
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| T |
11132539 |
cctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcataaccaaaccaatattttgattcatgtttacgagggtgaaagaa |
11132440 |
T |
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| Q |
138 |
aaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcctgctgcggcaggtgttcctcagatcataatccgcttccaaatcgatga |
237 |
Q |
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| T |
11132439 |
aaataactatggggaacaacttgctaggaaaatttgttttggaaattcccccagctccggcaggtatacctcaaatcatggtcagtttccaaattgataa |
11132340 |
T |
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| Q |
238 |
cgatggcatctt |
249 |
Q |
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| T |
11132339 |
tgacggcatctt |
11132328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 11170021 - 11169949
Alignment:
| Q |
117 |
atgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
189 |
Q |
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|||||||||| ||||||||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
11170021 |
atgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctcc |
11169949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 11275402 - 11275333
Alignment:
| Q |
120 |
tttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
189 |
Q |
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||||||| ||||||||||||| ||||| |||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
11275402 |
tttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctcc |
11275333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 11208841 - 11208771
Alignment:
| Q |
119 |
gtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
189 |
Q |
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| T |
11208841 |
gtttatgagggtgagaggcaaacaactaaggacaacaacttgctaggatcttttgagtttgaaattcctcc |
11208771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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