View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16768_low_45 (Length: 270)
Name: NF16768_low_45
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 8963569 - 8963329
Alignment:
| Q |
12 |
gagaagaatttccagcgttgaaaaaagcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8963569 |
gagaagaatttccagcgttgaaaaaagcaataaaagaagggtagttgagatgcaaggaaggattagaacaatcattggatgatgatcttgttatggcagt |
8963470 |
T |
|
| Q |
112 |
aatgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8963469 |
aatgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttg |
8963370 |
T |
|
| Q |
212 |
atatgaccagctcccaatgcaaaaggtgttgctgctatgtt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8963369 |
atatgaccagctcccaatgcaaaaggtgttgctgctatgtt |
8963329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 8945516 - 8945746
Alignment:
| Q |
13 |
agaagaatttccagcgttgaaaaaagcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagta |
112 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||| | || |||||||| || | ||| |
|
|
| T |
8945516 |
agaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtg |
8945615 |
T |
|
| Q |
113 |
atgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttga |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || | | |
|
|
| T |
8945616 |
atgtttttttgtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaa |
8945715 |
T |
|
| Q |
213 |
tatgaccagctcccaatgcaaaaggtgttgc |
243 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||| |
|
|
| T |
8945716 |
cataaccagctcccaatgcaagaggagttgc |
8945746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 8974964 - 8974733
Alignment:
| Q |
13 |
agaagaatttccagcgttgaaaaaagcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagta |
112 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||||||||| || |||| ||| ||||| |||||||||||||| | || |||||||| ||| ||| |
|
|
| T |
8974964 |
agaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtg |
8974865 |
T |
|
| Q |
113 |
atgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttga |
212 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||| || ||||||| |
|
|
| T |
8974864 |
atgtttttttgtgtgaagttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttga |
8974765 |
T |
|
| Q |
213 |
tatgaccagctcccaatgcaaaaggtgttgct |
244 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
8974764 |
tatgaccagctccttgtgcaaaaggtgttgct |
8974733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 8958529 - 8958320
Alignment:
| Q |
38 |
gcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagtaatgtgtttttgtgtgaagttaagtg |
137 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | ||| |||||||| || || |||||||| |||||||| |||| |||||||| | || |||||| |
|
|
| T |
8958529 |
gcaataaaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagtagctaagtg |
8958430 |
T |
|
| Q |
138 |
cacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctcccaatgcaaaagg |
237 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| || || | |||||||||||||||||||||||| |
|
|
| T |
8958429 |
cacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaagg |
8958330 |
T |
|
| Q |
238 |
tgttgctgct |
247 |
Q |
| |
|
||||||||| |
|
|
| T |
8958329 |
agttgctgct |
8958320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 9947987 - 9948169
Alignment:
| Q |
13 |
agaagaatttccagcgttgaaaaaagcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagta |
112 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||| |||||| ||||| || ||| ||||| ||||| ||||||||| | | |||||||| |||| ||| |
|
|
| T |
9947987 |
agaagaatttccaccattgaagaaagcaataaaaaaagggtggttaatatccaatgaaggtttagagcaatcattgaatgtggatcttgtaatggtagtg |
9948086 |
T |
|
| Q |
113 |
atgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaag |
195 |
Q |
| |
|
|| ||||| ||||||||||||||| || | |||| |||||||||||||||| |||||| ||||||| |||||| |||||||| |
|
|
| T |
9948087 |
atatgtttctgtgtgaagttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaag |
9948169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 9949356 - 9949424
Alignment:
| Q |
117 |
gtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagac |
185 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||| | |||||||| |||||||||||||| |
|
|
| T |
9949356 |
gttttggtgtgaagttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaagac |
9949424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 34962299 - 34962533
Alignment:
| Q |
13 |
agaagaatttccagcgttgaaaaaagcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagta |
112 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||| |||| ||| |
|
|
| T |
34962299 |
agaagaatttccatcattgaaaaaagcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtg |
34962398 |
T |
|
| Q |
113 |
atgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttga |
212 |
Q |
| |
|
|||| |||||||| | | |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || | |
|
|
| T |
34962399 |
atgtttttttgtgagtatttaagtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaa |
34962498 |
T |
|
| Q |
213 |
tatgaccagctcccaatgcaaaaggtgttgctgct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34962499 |
catgaccagctcccaatgcaaaaggtgttgctgct |
34962533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 21686680 - 21686918
Alignment:
| Q |
14 |
gaagaatttccagcgttgaaaaaagcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagtaa |
113 |
Q |
| |
|
|||||||| | ||| ||| | |||||||||||||||||||||||||||| |||||||| ||||| ||||||||| | || |||||||| |||||| | | |
|
|
| T |
21686680 |
gaagaattacgagcattggagaaagcaataaaagaagggtagttaagatctaaggaaggtttagagcaatcattgaaagaagatcttgtaatggcactga |
21686779 |
T |
|
| Q |
114 |
tgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgat |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| || |
|
|
| T |
21686780 |
tgtttttttgtgtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaat |
21686879 |
T |
|
| Q |
214 |
atgaccagctcccaatgcaaaaggtgttgctgctatgtt |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
21686880 |
atgaccagctcccaatgcaaaaggagttgctgctctgtt |
21686918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 49008697 - 49008487
Alignment:
| Q |
29 |
ttgaaaaaagcaataaaagaagggtagttaagatgcaaggaaggattagaacaatcattggacgatgatcttgttatggcagtaatgtgtttttgtgtga |
128 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||| | ||| ||||| |||||||||| || | || ||||| || ||||| | || | || || |||| |
|
|
| T |
49008697 |
ttgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggttagaacaattgttaaaagacgatctcgtgatggctgcgatattcttctgagtga |
49008598 |
T |
|
| Q |
129 |
agttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctcccaa |
228 |
Q |
| |
|
|||| | |||||| |||| ||| |||||||||||| || |||||||||||| ||||| ||||||||| |||| || |||||||| || |||||||| |
|
|
| T |
49008597 |
agtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaa |
49008498 |
T |
|
| Q |
229 |
tgcaaaaggtg |
239 |
Q |
| |
|
|| ||||||| |
|
|
| T |
49008497 |
agctaaaggtg |
49008487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University