View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_47 (Length: 257)
Name: NF16768_low_47
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 78 - 256
Target Start/End: Original strand, 39359566 - 39359747
Alignment:
| Q |
78 |
atcatgtaaaacgctactccta---aattttcatgggtttgattaattnnnnnnnnnttgcatgggtttgtttgccagtcactttcaattacagatttcg |
174 |
Q |
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| T |
39359566 |
atcatgtaaaacgctactcctactaaattttcatgggtttgattaattaaaaaaaaattgcatgagtttgtttgccagtcactttcaattacagatttcg |
39359665 |
T |
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| Q |
175 |
ttagagattatcttttaaaaaacaaaatcaagtagatgaattacattgaacgcagacgtaacacaataatctcgttcctata |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39359666 |
ttagagattatcttttaaaaaacaaaatcaagtagatgaattacattgaacgcagacgtaacccaataatctcgttcctata |
39359747 |
T |
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