View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_5 (Length: 605)
Name: NF16768_low_5
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 186 - 587
Target Start/End: Complemental strand, 21074530 - 21074140
Alignment:
| Q |
186 |
tgttcttaaagacaaaactataaccatatccctct---attgagtttatgtttgtgaacacattcataatatatatcttggaaaaaagaaatcaattgtt |
282 |
Q |
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||||||| |||| | |||| |||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||| |||||| |||||| || | |
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| T |
21074530 |
tgttcttgaagaaataactgtaaccatatccctcctccattgagtttacatttgtgaacagattcagaatatatatcttg-aaaaaacaaatcagtttct |
21074432 |
T |
|
| Q |
283 |
ttgaacggaacaaacaccctnnnnnnntagaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcactcatctgcaacatcttt |
382 |
Q |
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| T |
21074431 |
ttgaacagaacaaacaccctaataaaatagaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttca-------------tcttt |
21074345 |
T |
|
| Q |
383 |
cattggaatctcattcaaatcaaaattcataacaactctatctgccttcaattcattatggcttcgttctctcacggtttcaccttcattattgttcttc |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21074344 |
cattggaatctcattcaaatcaaaattcataacaactctatctgccttcaattcaatatggcttggttctctcacggtttcaccttcattattgttcttc |
21074245 |
T |
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| Q |
483 |
ttctcttcaatgtcaatagaggtattattatcctttaccttggtctctggtgattcatcaatgtcaccaatatcttcataattgcttgaaagtttgagtc |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
21074244 |
ttctcttcaatgtcaatagaggtattattatcctttaccttggtctctggtgattcatcaatgtcactaatatcttcagaattgcttgaaaatttgagtc |
21074145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 313 - 503
Target Start/End: Complemental strand, 21079119 - 21078929
Alignment:
| Q |
313 |
aacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcactcatctgcaacatctttcattggaatctcattcaaatcaaaattcat |
412 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | ||| || |||||||||||| | || |||||| ||| ||||||||||||||| | |
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| T |
21079119 |
aacaatgagttcaaatcacctaaattagaaaatgaaagaccagttgaacacattcatctgcaacaccatttgttggaagctcgttcaaatcaaaattcct |
21079020 |
T |
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| Q |
413 |
aacaactctatctgccttcaattcattatggcttcgttctctcacggtttcaccttcattattgttcttcttctcttcaatgtcaatagag |
503 |
Q |
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||||||| | |||| ||||||||||||||| || | |||||| | | ||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
21079019 |
aacaactttttctgacttcaattcattatgactctgctctctccctgattcaccttcattatttttcttcatttcttcaatgtcaatagag |
21078929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 315 - 440
Target Start/End: Original strand, 21155140 - 21155264
Alignment:
| Q |
315 |
caatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcactcatctgcaacatctttcattggaatctcattcaaatcaaaattcataa |
414 |
Q |
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||||||||| |||| |||||||||||| |||||| ||| ||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
21155140 |
caatgagtttaaatgacctaaataagacaatgaa-gaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataa |
21155238 |
T |
|
| Q |
415 |
caactctatctgccttcaattcatta |
440 |
Q |
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|||||| | || ||||||||||||| |
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| T |
21155239 |
caactccttttggcttcaattcatta |
21155264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 313 - 437
Target Start/End: Original strand, 21160655 - 21160779
Alignment:
| Q |
313 |
aacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcactcatctgcaacatctttcattggaatctcattcaaatcaaaattcat |
412 |
Q |
| |
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|||||||||||||||| |||||| |||| |||||||||| ||||||||| | ||||||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
21160655 |
aacaatgagttcaaatgacctaaccaagacaatgaaagaccaattggttttattcatctgaaacatcttctgttggaaactcattcaaatcaaaattcat |
21160754 |
T |
|
| Q |
413 |
aacaactctatctgccttcaattca |
437 |
Q |
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|||||||| | || |||||||||| |
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| T |
21160755 |
aacaactccttttggcttcaattca |
21160779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 27738762 - 27738872
Alignment:
| Q |
310 |
tagaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcactcatctgcaacatctttcattggaatctcattcaaatcaaaatt |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||| || |||||||| ||||||| | |||||||||||||||| |
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| T |
27738762 |
tagaacaatgagttcaaatgacctaaataagacaatgaaagaccaattggtttcattcatgtgaaacatcttctattggaagcgcattcaaatcaaaatt |
27738861 |
T |
|
| Q |
410 |
cataacaactc |
420 |
Q |
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||||||||||| |
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| T |
27738862 |
cataacaactc |
27738872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 310 - 440
Target Start/End: Original strand, 27731727 - 27731857
Alignment:
| Q |
310 |
tagaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcactcatctgcaacatctttcattggaatctcattcaaatcaaaatt |
409 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |||| ||| ||||| | |||||| |||||||||||||||||| |
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| T |
27731727 |
tagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaatt |
27731826 |
T |
|
| Q |
410 |
cataacaactctatctgccttcaattcatta |
440 |
Q |
| |
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||||||||||| | || ||||||||||||| |
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| T |
27731827 |
cataacaactccttttggcttcaattcatta |
27731857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 311 - 420
Target Start/End: Complemental strand, 21249823 - 21249714
Alignment:
| Q |
311 |
agaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcactcatctgcaacatctttcattggaatctcattcaaatcaaaattc |
410 |
Q |
| |
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|||||||| ||||||||| |||||||||| | ||||||| || ||||||||||| |||| ||||||||||| || ||| ||||||||||||||||||| |
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| T |
21249823 |
agaacaattagttcaaatgacctaaataatacaatgaaaaaccaattggtttcattcatgtgcaacatcttctgtttgaagctcattcaaatcaaaattc |
21249724 |
T |
|
| Q |
411 |
ataacaactc |
420 |
Q |
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|||||||||| |
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| T |
21249723 |
ataacaactc |
21249714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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