View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_54 (Length: 241)
Name: NF16768_low_54
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 17585436 - 17585560
Alignment:
| Q |
17 |
agaaacttgattcctgaatatgtgaaactgaaagcaaggttaactgatgccctcaatcaagaaaataacctacaaacattaccacatcccattcatagaa |
116 |
Q |
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| T |
17585436 |
agaaacttgattactgaatatgtcaaactgaaagcaaggttaactgatgccctcaatcaagaaaataacctacaaacattaccacatcccattcatagaa |
17585535 |
T |
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| Q |
117 |
tattgttaaattgaagagttggagt |
141 |
Q |
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| T |
17585536 |
tattgttaaattgaagagttggagt |
17585560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 13511063 - 13510950
Alignment:
| Q |
18 |
gaaacttgattcctgaatatgtgaaactgaaagcaaggttaactgatgccctcaatcaagaaaataacctacaaacattaccacatcccattcatagaat |
117 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||| |||||| |
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| T |
13511063 |
gaaacttgattactgaatatgtgaaattgaa-gcaaggttaactgatgccctcaatcaagcaaataacctaaaaaaattactacatcccatttgtagaat |
13510965 |
T |
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| Q |
118 |
attgttaaattgaag |
132 |
Q |
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|||| |||||||||| |
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| T |
13510964 |
attgctaaattgaag |
13510950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 13600594 - 13600481
Alignment:
| Q |
18 |
gaaacttgattcctgaatatgtgaaactgaaagcaaggttaactgatgccctcaatcaagaaaataacctacaaacattaccacatcccattcatagaat |
117 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||| |||||| |
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| T |
13600594 |
gaaacttgattactgaatatgtgaaattgaa-gcaaggttaactgatgccctcaatcaagcaaataacctaaaaaaattactacatcccatttgtagaat |
13600496 |
T |
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| Q |
118 |
attgttaaattgaag |
132 |
Q |
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|||| |||||||||| |
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| T |
13600495 |
attgctaaattgaag |
13600481 |
T |
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