View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_60 (Length: 230)
Name: NF16768_low_60
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 6869638 - 6869446
Alignment:
| Q |
14 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
6869638 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacttgtaaaatcaaaagaaatgataa |
6869539 |
T |
|
| Q |
114 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagag |
207 |
Q |
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| T |
6869538 |
attaatagtcacttacccctttctaatccatcaaaagattaacag-ttttgaagtctctatgtataatgttgttttgatgcaaataaggaagag |
6869446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 41222247 - 41222050
Alignment:
| Q |
14 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
41222247 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatgacaa |
41222148 |
T |
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| Q |
114 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagt |
212 |
Q |
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| T |
41222147 |
attaatagtcacttacccctttctcatccatcaaaatactaaca-tttttgaggtctctatgtataatgatgttttgatgcaaataaggaagagtaagt |
41222050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 3106497 - 3106689
Alignment:
| Q |
14 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
3106497 |
aatatacacaactagagttttagagtgatttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatggcaa |
3106596 |
T |
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| Q |
114 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagag |
207 |
Q |
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| T |
3106597 |
attaatagtcacttacccctttctcatccatcaaaagatttacag-ttttgaggtctctatgtataatgttgttttgatgcaaataaggaagag |
3106689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 8449961 - 8450147
Alignment:
| Q |
14 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
8449961 |
aatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaa |
8450060 |
T |
|
| Q |
114 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataag |
201 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
8450061 |
attaatagtcacttacccctttctcatccatcaaaagattagcag-ttttgaggtctcgatgtataatgttgttttgatgcaaataag |
8450147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 48731046 - 48731241
Alignment:
| Q |
17 |
atacacaactagagttttagagtggtttatattgt-tatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaaat |
115 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||| |
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| T |
48731046 |
atacacaactagagttttagagtggtttatattttatatagtatgatttgaaagcatcaactaagaacaagaacttgtaaaattcaaagaaatgacaaat |
48731145 |
T |
|
| Q |
116 |
taatagtcacttacccctttctaatccatc-----aaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagag |
207 |
Q |
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|||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
48731146 |
taatagtcacttacccatttctcatccatcaaaagaaaagattaacag-ttttgaggtctgtatgaataatgttgttttgatgcaaataaggaagag |
48731241 |
T |
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