View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_7 (Length: 590)
Name: NF16768_low_7
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 338 - 576
Target Start/End: Complemental strand, 43004031 - 43003791
Alignment:
| Q |
338 |
ctctctggaaaaatggatgtagcatctgatattcgtggttgggatgagttgatccccgatactttggcgctgattttcacgaaactttcactccgtgaaa |
437 |
Q |
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| T |
43004031 |
ctctctggaaaaatggaagtagcatctgatattcgtggttgggatgagttgatccccgatactttggcgctgattttcacgaaactttcactccgtgaaa |
43003932 |
T |
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| Q |
438 |
gattgaccgtgatcccaatggtatgcaaatcttgggccagtgctgtttatggaccttactgttggcaagagatagaaatcactgactggag--cagcatt |
535 |
Q |
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| T |
43003931 |
gattgaccatgatcccaatggtatgcaaatcttgggccagtgctgtttatggaccttactgttggcaagagatagaaatcactgactggagcacagcatt |
43003832 |
T |
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| Q |
536 |
tacgagcatcggaaaaatgagcggatggttcagatgttgat |
576 |
Q |
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| T |
43003831 |
tacgagcatcggaaaaatgagcggatggttcagatgttgat |
43003791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 43004365 - 43004101
Alignment:
| Q |
10 |
ataattctcctcaaaggttgttggttgagacaattgtggagcgtatcaagataaaggttttccaaatctcttgattcagtcacnnnnnnnatcttatttt |
109 |
Q |
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| T |
43004365 |
ataattctcctcaaaggttgttggttgagacaattgtggagcgtatcaagataaaggttttccaaatctcttgattcagtcactttttttatcttatttt |
43004266 |
T |
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| Q |
110 |
cctcatagacataagacatggtgaaaatgcttcttt------atattcatattcatcttctattctaaccagctttgaaagtttcaatttatttctttgt |
203 |
Q |
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| T |
43004265 |
cctcttagacataagacatggtgaaaatgcttctttatattcatattcatattcatcttctattctaaccagctttgaaagtttcaatttatttctttgt |
43004166 |
T |
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| Q |
204 |
tcttgatttgtgtgtttagaatgattcttgaaaatctcttaaatatttgaatttaatcatggaaa |
268 |
Q |
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| T |
43004165 |
tcttgatttgtgtgtttagaatgattcttgaaaatctcttaaatatttgaatttaatcatggaaa |
43004101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 347 - 532
Target Start/End: Original strand, 27071506 - 27071691
Alignment:
| Q |
347 |
aaaatggatgtagcatctgatattcgtggttgggatgagttgatccccgatactttggcgctgattttcacgaaactttcactccgtgaaagattgaccg |
446 |
Q |
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||||||| ||| ||||||||||||||| |||||| ||||||||||| ||||| |||| ||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
27071506 |
aaaatggcagtatcatctgatattcgtgcttgggacgagttgatccctgataccttggggctgattttcacgaaactttcgctctgtgaaagattcaccg |
27071605 |
T |
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| Q |
447 |
tgatcccaatggtatgcaaatcttgggccagtgctgtttatggaccttactgttggcaagagatagaaatcactgactggagcagc |
532 |
Q |
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| T |
27071606 |
tgatcccaagggtctgcaaatcatgggccagtgctgtaaatggtccttactgttggcaagagatagacataactgactggtgcagc |
27071691 |
T |
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