View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_low_8 (Length: 530)
Name: NF16768_low_8
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 26218533 - 26218229
Alignment:
| Q |
11 |
cacagaggtatggtggtggcgctcgatgttcggttacacctgaaaagtagcaggtggtattttcacagtgggaaagggtgtcaatgtcactggaaaggat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26218533 |
cacagaggtatggtggtggcgctcgatgttcggttacacctgaaaagtagcaggtggtattttcacagtgggaaagggtgtcaatgtcactggaaaggat |
26218434 |
T |
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| Q |
111 |
gagaacagtgataaacacctgctgaaaaatatacaaccgctccaggaatgaatcactgctagtaggtggtggtgtcggtggctaatgtcgttgctggcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26218433 |
gagaacagtgataaacacctgctgaaaaatatacaaccgctccaggaatgaatcactgctagtaggtggtggtgtcggtggctaatgtcgttgctggcag |
26218334 |
T |
|
| Q |
211 |
cagtgaatcactgataaagtttacaatattagaacatgttttgataccgggtaaaatatgtaaaacgctgtaaattttacgcaacactaatttttgtgat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26218333 |
cagtgaatcactgataaagtttacaatattagaacatgttttgataccgggtaaaatatgtaaaacgctgtaaattttacgcaacactaatttttgtgat |
26218234 |
T |
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| Q |
311 |
taatg |
315 |
Q |
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||||| |
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| T |
26218233 |
taatg |
26218229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 422 - 515
Target Start/End: Complemental strand, 26218122 - 26218029
Alignment:
| Q |
422 |
atcaacaattccaggtaactgaatctagttttacgcaacaccaacgaggtctacaattataagttaatacaatctcttcattcttaaaaaatgt |
515 |
Q |
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| T |
26218122 |
atcaacaattccaggtaactgaagctagttttacgcaacaccaacgaggtctacaattataagttaatacaatctcttcattcttaaaaaatgt |
26218029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 8472306 - 8472200
Alignment:
| Q |
22 |
ggtggtggcgctcgatgttcggttacacctgaaaagtagcaggtggtattttcacagtgggaaagggtgtcaatgtcactggaaaggatgagaacagtga |
121 |
Q |
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|||||||||||||| |||| || |||| ||||||| |||| |||||||| ||||| |||||||||||| || ||||| |||| ||||||| ||||||| |
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| T |
8472306 |
ggtggtggcgctcggtgttgagtcgcaccggaaaagtggcagctggtatttgcacagcgggaaagggtgtgaaggtcaccggaagggatgagcacagtga |
8472207 |
T |
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| Q |
122 |
taaacac |
128 |
Q |
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||||||| |
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| T |
8472206 |
taaacac |
8472200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 37078627 - 37078540
Alignment:
| Q |
26 |
gtggcgctcgatgttcggttacacctgaaaagtagcaggtggtattttcacagtgggaaagggtgtcaatgtcactggaaaggatgag |
113 |
Q |
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||||||| ||||||| || |||| ||||||| |||| |||||||| ||||| |||||||||||| || |||||||||| ||||||| |
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| T |
37078627 |
gtggcgcccgatgttgagtggcaccggaaaagtggcagctggtatttgcacagcgggaaagggtgtgaaggtcactggaagggatgag |
37078540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 48572305 - 48572364
Alignment:
| Q |
456 |
gcaacaccaacgaggtctacaattataagttaatacaatctcttcattcttaaaaaatgt |
515 |
Q |
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|||||| ||| |||||| ||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
48572305 |
gcaacatcaaggaggtcaacacttaaaagttaaaacaatctcttcattcttaaaaaatgt |
48572364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 4445833 - 4445786
Alignment:
| Q |
96 |
gtcactggaaaggatgagaacagtgataaacacctgctgaaaaatata |
143 |
Q |
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|||||||||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
4445833 |
gtcactggaagggatgagcacagtgataaacaccaactgaaaaatata |
4445786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 27828120 - 27828165
Alignment:
| Q |
83 |
aaagggtgtcaatgtcactggaaaggatgagaacagtgataaacac |
128 |
Q |
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||||||||| || |||||||||| ||||||| |||||||||||||| |
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| T |
27828120 |
aaagggtgtgaaggtcactggaagggatgagcacagtgataaacac |
27828165 |
T |
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