View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16769_high_14 (Length: 325)

Name: NF16769_high_14
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16769_high_14
NF16769_high_14
[»] chr8 (1 HSPs)
chr8 (18-308)||(34478738-34479028)
[»] chr4 (3 HSPs)
chr4 (85-124)||(53147943-53147982)
chr4 (139-185)||(53148608-53148654)
chr4 (141-185)||(7842528-7842572)
[»] chr5 (3 HSPs)
chr5 (136-184)||(17071234-17071282)
chr5 (136-184)||(34600271-34600319)
chr5 (148-191)||(33586382-33586425)
[»] chr2 (2 HSPs)
chr2 (136-184)||(18174663-18174711)
chr2 (136-184)||(26587159-26587207)
[»] chr3 (2 HSPs)
chr3 (139-185)||(48764487-48764533)
chr3 (139-184)||(17606378-17606423)
[»] chr7 (1 HSPs)
chr7 (136-184)||(21496977-21497025)
[»] chr6 (1 HSPs)
chr6 (136-184)||(3623185-3623233)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 34479028 - 34478738
Alignment:
Q  18 agttggatgtttaaagcagatagagcggaacgagtttgcagcatggaggggaatccagggnnnnnnngatcaccggagtaaattaaacaagtaattatgg 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  34479028 agttggatgtttaaagcagatagagcggtacgagtttgcagcatggaggggaatccagggaaaaaaagatcaccggagtaaattaaacaagtaattatgg 34478929  T
Q  118 gtcattggattnnnnnnntaaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaatagattccgatacaagnnnnnnnntctaatatt 217  Q
    || ||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  34478928 gttattggattaaaaaaataaacggttgagatttagtgtcaacgaatttgttgacacatgatgtcaatagattccgatacaagaaaaaagatctaatatt 34478829  T
Q  218 tacttcgaattgtttttagttacactttgctatagcctatggcaatctcggccaaaacatgtaagggaaaaataaaatgcaagaactacct 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34478828 tacttcgaattgtttttagttacactttgctatagcctatggcaatctcggccaaaacatgtaagggaaaaataaaatgcaagaactacct 34478738  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 53147982 - 53147943
Alignment:
Q  85 gatcaccggagtaaattaaacaagtaattatgggtcattg 124  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  53147982 gatcaccggagtaaattaaacaagtaattatggatcattg 53147943  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 53148608 - 53148654
Alignment:
Q  139 acggttgagatttaatgtcaacgaatttgttgacacatgatgtcaat 185  Q
    |||||||||||||  ||||||||||| ||||||||| ||||||||||    
T  53148608 acggttgagatttggtgtcaacgaatctgttgacacctgatgtcaat 53148654  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 7842528 - 7842572
Alignment:
Q  141 ggttgagatttaatgtcaacgaatttgttgacacatgatgtcaat 185  Q
    |||||||||||  |||||||||||| |||||||| ||||||||||    
T  7842528 ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaat 7842572  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 17071282 - 17071234
Alignment:
Q  136 taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa 184  Q
    ||||||||||||||||  |||||||||||| |||||||| |||||||||    
T  17071282 taaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaa 17071234  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 34600319 - 34600271
Alignment:
Q  136 taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa 184  Q
    ||||||||||||||||  |||||||||||| |||||||| |||||||||    
T  34600319 taaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaa 34600271  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 33586425 - 33586382
Alignment:
Q  148 atttaatgtcaacgaatttgttgacacatgatgtcaatagattc 191  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||    
T  33586425 atttagtgtcaacgaatttgttgacacctaatgtcaatagattc 33586382  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 18174663 - 18174711
Alignment:
Q  136 taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa 184  Q
    ||||||||||||||||  |||||||||||| |||||||| |||||||||    
T  18174663 taaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaa 18174711  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 26587207 - 26587159
Alignment:
Q  136 taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa 184  Q
    |||||||||||||||| |||||||||||| | ||||||| |||||||||    
T  26587207 taaacggttgagatttgatgtcaacgaatctattgacacctgatgtcaa 26587159  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 48764533 - 48764487
Alignment:
Q  139 acggttgagatttaatgtcaacgaatttgttgacacatgatgtcaat 185  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||    
T  48764533 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaat 48764487  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 17606378 - 17606423
Alignment:
Q  139 acggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa 184  Q
    |||||||||||||||||| ||||||| ||||||||| |||| ||||    
T  17606378 acggttgagatttaatgttaacgaatctgttgacacctgatatcaa 17606423  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 21496977 - 21497025
Alignment:
Q  136 taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa 184  Q
    ||||||||||||||||  |||||||||||| |||||||| || ||||||    
T  21496977 taaacggttgagatttggtgtcaacgaattcgttgacacctgttgtcaa 21497025  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 3623233 - 3623185
Alignment:
Q  136 taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa 184  Q
    ||||||||||||||||  |||||| ||||| |||||||| |||||||||    
T  3623233 taaacggttgagatttggtgtcaaagaattcgttgacacctgatgtcaa 3623185  T

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