View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16769_high_19 (Length: 240)

Name: NF16769_high_19
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16769_high_19
NF16769_high_19
[»] chr5 (4 HSPs)
chr5 (1-200)||(3720459-3720654)
chr5 (104-138)||(3015626-3015660)
chr5 (154-191)||(5802750-5802787)
chr5 (98-138)||(16275306-16275346)
[»] scaffold0072 (1 HSPs)
scaffold0072 (149-199)||(24537-24587)
[»] chr3 (3 HSPs)
chr3 (104-142)||(16078868-16078906)
chr3 (100-138)||(33909631-33909669)
chr3 (100-138)||(50338383-50338421)
[»] chr4 (4 HSPs)
chr4 (99-138)||(27117225-27117264)
chr4 (104-138)||(17077149-17077183)
chr4 (104-138)||(55253347-55253381)
chr4 (101-138)||(53386114-53386151)
[»] scaffold0060 (1 HSPs)
scaffold0060 (100-138)||(13633-13671)
[»] chr8 (3 HSPs)
chr8 (149-194)||(6896431-6896476)
chr8 (162-191)||(22942544-22942573)
chr8 (100-136)||(5720787-5720823)
[»] chr6 (1 HSPs)
chr6 (149-198)||(13364078-13364127)
[»] chr2 (1 HSPs)
chr2 (100-141)||(15820113-15820154)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3720654 - 3720459
Alignment:
Q  1 ctctttgttttttcagaaagctttatgctttggtgtgtatgatttgattgtgatattgatttttccaaacctacattcatgatctgtcttacaatttctg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3720654 ctctttgttttttcagaaagctttatgttttggtgtgtatgatttgattgtgatattgatttttccaaacctacattcatgatctgtcttacaatttttg 3720555  T
Q  101 ggtctaactcaaccttacaaaaccgacttgcaaggtgatgatgcttgcctcactttcaagccatatctcatcaaatgtgtgactcttaacacacccctcc 200  Q
    ||||||||||||||||||||| |||  |||||||||||||||     ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  3720554 ggtctaactcaaccttacaaatccggattgcaaggtgatgatca---cctcactttcaagccatatctcatccaatgtgtgact-ttaacacacccctcc 3720459  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 3015626 - 3015660
Alignment:
Q  104 ctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  3015626 ctaactcaaccttacaaaaccggcttgcaaggtga 3015660  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 5802787 - 5802750
Alignment:
Q  154 tttcaagccatatctcatcaaatgtgtgactcttaaca 191  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  5802787 tttcaggccatatttcatcaaatgtgtgactcttaaca 5802750  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 16275346 - 16275306
Alignment:
Q  98 ctgggtctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  16275346 ctgggtctaactcaaccttacaaaaccaccttgtaaggtga 16275306  T

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Target: scaffold0072 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 24537 - 24587
Alignment:
Q  149 ctcactttcaagccatatctcatcaaatgtgtgactcttaacacacccctc 199  Q
    |||| ||||| ||||||||||||| |||||| |||||||||||||||||||    
T  24537 ctcattttcacgccatatctcatccaatgtgagactcttaacacacccctc 24587  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 16078868 - 16078906
Alignment:
Q  104 ctaactcaaccttacaaaaccgacttgcaaggtgatgat 142  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  16078868 ctaactcaaccttaaaaaaccgacttgcaaggtgatgat 16078906  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 33909631 - 33909669
Alignment:
Q  100 gggtctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  33909631 gggtctaactcatccttacaaaaccgacttgcaaggtga 33909669  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 50338383 - 50338421
Alignment:
Q  100 gggtctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  50338383 gggtctaactcaaccttacaaaaccggcttgtaaggtga 50338421  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 27117225 - 27117264
Alignment:
Q  99 tgggtctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  27117225 tgggtctaactcatccttacaaaaccgacttgtaaggtga 27117264  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 17077149 - 17077183
Alignment:
Q  104 ctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  17077149 ctaactcaaccttacaaaaccggcttgcaaggtga 17077183  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 55253381 - 55253347
Alignment:
Q  104 ctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    ||||||||||||||||||||||||||| |||||||    
T  55253381 ctaactcaaccttacaaaaccgacttgtaaggtga 55253347  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 53386114 - 53386151
Alignment:
Q  101 ggtctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  53386114 ggtctaactcatccttacaaaaccgacttgtaaggtga 53386151  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 13633 - 13671
Alignment:
Q  100 gggtctaactcaaccttacaaaaccgacttgcaaggtga 138  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  13633 gggtctaactcaaccttacaaaaccggcttgtaaggtga 13671  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 6896431 - 6896476
Alignment:
Q  149 ctcactttcaagccatatctcatcaaatgtgtgactcttaacacac 194  Q
    |||| ||||| || |||||||||| |||||||||||||||||||||    
T  6896431 ctcattttcaggcaatatctcatctaatgtgtgactcttaacacac 6896476  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 22942544 - 22942573
Alignment:
Q  162 catatctcatcaaatgtgtgactcttaaca 191  Q
    ||||||||||||||||||||||||||||||    
T  22942544 catatctcatcaaatgtgtgactcttaaca 22942573  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 5720787 - 5720823
Alignment:
Q  100 gggtctaactcaaccttacaaaaccgacttgcaaggt 136  Q
    |||||||||||| |||||||||||||||||| |||||    
T  5720787 gggtctaactcatccttacaaaaccgacttgtaaggt 5720823  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 13364078 - 13364127
Alignment:
Q  149 ctcactttcaagccatatctcatcaaatgtgtgactcttaacacacccct 198  Q
    |||| ||||||||||||||| |||||||||  ||||||||||||| ||||    
T  13364078 ctcattttcaagccatatctaatcaaatgtaggactcttaacacatccct 13364127  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 15820113 - 15820154
Alignment:
Q  100 gggtctaactcaaccttacaaaaccgacttgcaaggtgatga 141  Q
    ||||||||||||  ||||||||||||||||| ||||||||||    
T  15820113 gggtctaactcattcttacaaaaccgacttgtaaggtgatga 15820154  T

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