View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16769_high_22 (Length: 219)
Name: NF16769_high_22
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 34215071 - 34214873
Alignment:
| Q |
1 |
gttgagcacttctacaagtctctgttgcttccaagagtgagagatgatgtaaaaaagaatcaacagtttcgttagaaatcgactcaactagtgctctcat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
34215071 |
gttgagcacttctacaagtttctgttgcttccaagagtgagagatgatgtaaaaaagaatcaacagtttcgttagaaatcgactcaacta-----ctcgt |
34214977 |
T |
|
| Q |
101 |
gatttttagaaatgcttctttagtcccaattatgcttcgaaacagat-ggcataataccggtgttcaagttatttcttttaataattaccacgaaggtat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34214976 |
gatttttagaaatgcttctttagtcccaattatgcttcgaaatagatgggcataataccggtgttcaagttatttcttttaataattaccacgaaggtat |
34214877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 11213960 - 11214069
Alignment:
| Q |
103 |
tttttagaaatgcttctttagtcccaattatgcttcgaaacagatggcataatacc---------ggtgttcaagttatttcttttaataattaccacga |
193 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
11213960 |
tttttcgaaatgcttctttagtcccaattatgcttcgaaacagatggcataatgccggtaatattggtgttcaagttatttcttttaacatttaccgcga |
11214059 |
T |
|
| Q |
194 |
aggtatctgt |
203 |
Q |
| |
|
||||| |||| |
|
|
| T |
11214060 |
aggtaactgt |
11214069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 10637723 - 10637662
Alignment:
| Q |
3 |
tgagcacttctacaagtctctgttgcttccaagagtgagagatgatgtaaaaaagaatcaac |
64 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10637723 |
tgagcgcttctacaagcttgtgttgcttccaagagtgagagatgatataaaaaagaaccaac |
10637662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 16043970 - 16043920
Alignment:
| Q |
103 |
tttttagaaatgcttctttagtcccaattatgcttcgaaacagatggcataa |
154 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
16043970 |
tttttagaaatgcttctttagtcgga-ttatgcttcgaaacagatggcataa |
16043920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 39970160 - 39970236
Alignment:
| Q |
80 |
cgactcaactagtgctctcatgatttttagaaatgcttctttagtcccaattatgcttcgaaacagatggcataata |
156 |
Q |
| |
|
||||||||| |||||||| ||||| |||| ||| | ||||||||||| || |||||||||||| || |||||||| |
|
|
| T |
39970160 |
cgactcaacaagtgctctaatgatatttaaaaactcctctttagtccctatggtgcttcgaaacaaatagcataata |
39970236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University