View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_high_5 (Length: 499)
Name: NF16769_high_5
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 484
Target Start/End: Original strand, 26937411 - 26937881
Alignment:
| Q |
11 |
cacagatgcatatatcttcaattaatacaatttcactcaaggtgtctgaacagtgaacaaaatacttggtagacttgtttttatttctcatgttgaaaag |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26937411 |
cacaaatgcatatatcttcaattaatacaatttcactcaaggtgtctgaacagtgaacaaaatacttggtagacttgtttttatttctcatgttgaaaag |
26937510 |
T |
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| Q |
111 |
acatggttaataatatggtccaagtnnnnnnnnnttaaatagcatgtctttcgcaaaacaacttggcctttggatacacgttagtcaatccaatactgcg |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
26937511 |
acatggttaataatatggtccaagtaaaaaaaaaaaaaatagcatgtc----gcaaaacaacttagactttggatacacgttagtcaatccaatactgcg |
26937606 |
T |
|
| Q |
211 |
tcccaatgcacagtcgccgtgaaaattctaaagctagtatgtcaagcttctgtgttgccgtgattttcaccgcaatttagtccaaatacgatgccattcc |
310 |
Q |
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||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
26937607 |
tcccaatgcacggtcaccgtgaaaattctgaagctagtatgtcaagcttctgtgttgccgtgtttttcaccgcgatttagtccaaatacgatgccattcc |
26937706 |
T |
|
| Q |
311 |
aaacatacgcttaatatatgtttggaaccacaaacatatctcttatgacgcgt-gcgaaatagccttggaatgtaagaaacaaaatctaaacgtgaattn |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26937707 |
aaacatacgctcaatatatgtttggaaccacaaacatatctcttctgacgcgtggcgaaacagccttggaatgtaagaaacaaaatctaaacgtgaatta |
26937806 |
T |
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| Q |
410 |
nnnnnncgcttagcatgtgacacattattactctggattcggaacgcctccacaact-aatgtgctagtagcaact |
484 |
Q |
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| T |
26937807 |
aaaaaatgcttagcatgtgacacattattactc-ggatttggaacacctccacaactaaatgtgccagtagcaact |
26937881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 196 - 321
Target Start/End: Complemental strand, 20791137 - 20791012
Alignment:
| Q |
196 |
caatccaatactgcgtcccaatgcacagtcgccgtgaaaattctaaagctagtatgtcaagcttctgtgttgccgtgattttcaccgcaatttagtccaa |
295 |
Q |
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||||||| ||| |||||||||||||| || ||||||| |||||| |||||||||| ||||||||||| |||||||| |||||| ||| |||| |||||| |
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| T |
20791137 |
caatccattaccgcgtcccaatgcacggttgccgtgagaattctgaagctagtatatcaagcttctgggttgccgtcgttttcaacgcgattttgtccaa |
20791038 |
T |
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| Q |
296 |
atacgatgccattccaaacatacgct |
321 |
Q |
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| T |
20791037 |
atctgatgccattccaaacatacgct |
20791012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 26135618 - 26135483
Alignment:
| Q |
179 |
tttggatacacgttagtcaatccaatactgcgtcccaatgcacagtcgccgtgaaaattctaaagctagtatgtcaagcttctgtgttgccgtgattttc |
278 |
Q |
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| T |
26135618 |
tttggataagcgtttgccaatctaataccgcgtcccaatgcacggttgccgtgaaaattcagaagctagtatatcaagcttctgcattgccgtggttttc |
26135519 |
T |
|
| Q |
279 |
accgcaatttagtccaaatacgatgccattccaaac |
314 |
Q |
| |
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| T |
26135518 |
aacgccattttgtcctaatacgacaccaatccaaac |
26135483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 41535529 - 41535614
Alignment:
| Q |
233 |
aaattctaaagctagtatgtcaagcttctgtgttgccgtgattttcaccgcaatttagtccaaatacgatgccattccaaacatac |
318 |
Q |
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||||||| |||||||||| |||||||||||||||||| || |||||| ||| |||| ||| |||||||| |||| ||||||||||| |
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| T |
41535529 |
aaattctgaagctagtatatcaagcttctgtgttgccatggttttcaacgcgattttgtctaaatacgacgccaatccaaacatac |
41535614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 38169994 - 38170104
Alignment:
| Q |
208 |
gcgtcccaatgcacagtcgccgtgaaaattctaaagctagtatgtcaagcttctgtgttgccgtgattttcaccgcaatttagtccaaatacgatgccat |
307 |
Q |
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|||||||||||||| || || ||||||| ||| | |||| ||| |||||||||||||||| | || ||| || ||||||| ||||||||||| |||| |
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| T |
38169994 |
gcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagcttctgtgttgtcatggtttccaatgcaattttatccaaatacgacgccaa |
38170093 |
T |
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| Q |
308 |
tccaaacatac |
318 |
Q |
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||||||||||| |
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| T |
38170094 |
tccaaacatac |
38170104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 8917678 - 8917610
Alignment:
| Q |
179 |
tttggatacacgttagtcaatccaatactgcgtcccaatgcacagtcgccgtgaaaattctaaagctag |
247 |
Q |
| |
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|||||| ||| ||| ||||||||||||| || ||||||||||| ||| |||||||||||| ||||||| |
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| T |
8917678 |
tttggaaacatgtttgtcaatccaataccgcatcccaatgcactttcgtcgtgaaaattctgaagctag |
8917610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 11329923 - 11329835
Alignment:
| Q |
210 |
gtcccaatgcacagtcgccgtgaaaattctaaagctagtatgtcaagcttctgtgttgccgtgattttcaccgcaatttagtccaaata |
298 |
Q |
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||||||||| ||| ||| |||||||||| | ||| ||||||| |||||||||| |||||||||||| ||| || |||| ||||||||| |
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| T |
11329923 |
gtcccaatgaacattcgtcgtgaaaattttgaagttagtatgccaagcttctgcgttgccgtgattctcaacgtgattttgtccaaata |
11329835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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