View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16769_high_6 (Length: 464)
Name: NF16769_high_6
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Original strand, 34975032 - 34975467
Alignment:
| Q |
11 |
cacagacatagagacaaaaaattcataaaaagataataatatagtactactgcatattttcttcagctagaaaagaagaactaccatatcttcctcgatg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975032 |
cacaaacatagagacaaaaaattcataaaaagataataatatagtactactgcatattttcttcagctagaaaagaagaactaccatatcttcctcgatg |
34975131 |
T |
|
| Q |
111 |
ttacagtacagcatatagtcctaaagtttccatgacgtgtcgcacacaaagacacatacatatatttatataatccaaaaggaaacacaccaaggcagta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975132 |
ttacagtacagcatatagtcctaaagtttccatgacgtgtcgcacacaaagacacatacatatatttatataatccaaaaggaaacacaccaaggcagta |
34975231 |
T |
|
| Q |
211 |
gatttggactctgaagcttctcattcacactcgagccatctcttgattaattcaatagaattttgaagacaccccttgatcatagaaagaaacactacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975232 |
gatttggactctgaagcttctcattcacactcgagccatctcttgattaattcaatagaattttgaagacaccccttgatcatagaaagaaacactacat |
34975331 |
T |
|
| Q |
311 |
aataaaaatacatggaatttaaaccctcccatactaagactttatgtagataatatataaattatatatgaagaaagtgattgattaggtcattggtcaa |
410 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975332 |
aagaaaaatacatggaatttaaaccctcccatacaaagactttatgtagataatatataaattatatatgaagaaagtgattgattaggtcattggtcaa |
34975431 |
T |
|
| Q |
411 |
attaagcaagctaagagagagcttagccgttgatca |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975432 |
attaagcaagctaagagagagcttagccgttgatca |
34975467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University