View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_high_7 (Length: 461)
Name: NF16769_high_7
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 50671322 - 50671770
Alignment:
| Q |
1 |
ccggggtttatatattctgtgatggtgaaagcaaaagttaatggcaactaattaacgagggaaaacatttcttgatttgggatgaagtgcaacatagatt |
100 |
Q |
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| T |
50671322 |
ccggggtttatatattttgtgatggtgaaagcaaaagttaatagcaactaattaacgagggaaaacatttcttgatttgggatgaagtgcaacatagatt |
50671421 |
T |
|
| Q |
101 |
gtgtaccagattttattaccaattccatgcaatttcgttgttgaaatgatttcatttttcaagttgaaatgaggaccactccatcttttcagctgaaaat |
200 |
Q |
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| T |
50671422 |
gtgtaccagattttattaccaattccatgcaatttcgttgttgaaatgatttcatttttcaagttgaaatgaggaccactccatcttttcagctgaaaat |
50671521 |
T |
|
| Q |
201 |
aatagacttgtgcgtttggaaaccattaaattgcatggaattgcagtagaattgttgttatgacatttattacatatttcctcttctcaccaacttcatt |
300 |
Q |
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| T |
50671522 |
aatagacttgtgcgtttggaaaccattaaattgcatggaattgcagtagaattgttgttatgacatttattacatatttcctcttctcaccaacttcatt |
50671621 |
T |
|
| Q |
301 |
aaattaacaccgttcatccaaatttaagcaacaagaaattgaaatgactgagacaagtcatattgtacgctttgtcatctgtagcaatagcaactaccct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50671622 |
aaattaacaccgttcatccaaatttaagcaacaagaaattgaaatgactgagacaagtcatattgtacgctttgtcatctgtagcaatagcaactaccct |
50671721 |
T |
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| Q |
401 |
tttatcattaccacttgccactgtacgcttctttggtcgtgaaaatatt |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50671722 |
tttatcattaccacttgccactgtacgcttctttggtcgtgaaaatatt |
50671770 |
T |
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