View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_low_1 (Length: 690)
Name: NF16769_low_1
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 674
Target Start/End: Complemental strand, 16277669 - 16277023
Alignment:
| Q |
18 |
aactactatgccttaagtgtttcaaaacagaattgaaagactacaaacctgtgccttattatacaacaatcaagtaggttcttgtgatttctcttcatta |
117 |
Q |
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| T |
16277669 |
aactactatgccttaagtgtttcaaaacagaattgaaagactacaaacctgtgccttattatacaacaatcaagtaggttcttgtgatttctcttcatta |
16277570 |
T |
|
| Q |
118 |
ttttgaacaaaatcttccgtcctagtaaagagacaatattattttaatttgaatgaaatgaaatgagcggactattcatctaaagtggtctatttgcaat |
217 |
Q |
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| T |
16277569 |
ttttgaacaaaatcttccgtcctagtaaagagacaatattattttaatttgaatgaaatgaaatgagaggactattcatctaaagtggtctatttgcaat |
16277470 |
T |
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| Q |
218 |
aaggtcacaaagctgtgacattataaagatgcttacgtgtgtatttccctcatcgaaaaactatgaatttctcatcaggtatgttttctttcatatctct |
317 |
Q |
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| T |
16277469 |
aaggtcacaaagctgtgacattataaagatgcttacgcgtgtatttccctcatcgaaaaactatgaatttctcatcaggtatgttttctttcatatctct |
16277370 |
T |
|
| Q |
318 |
catcatgaattggtatgaattgtaggaacaaaatattggtttgtaaagactattatagaatatgtttcttgtcttattcaatttcagtttaaaaatctat |
417 |
Q |
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| T |
16277369 |
catcatgaattg----------taggaacaaaatattggtttataaagactattatagaatctgtttcttgtcttattcaatttcagtttaaaaatctat |
16277280 |
T |
|
| Q |
418 |
atcttttggttttgctttggaatttggttaaaaacatgttgaatatggcataaaatacaaccaaaatcaacgggcttgactttaactaccaaccaagaaa |
517 |
Q |
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| T |
16277279 |
atcttttggttttgctttggaatttggttaaaaacatgttgaatatggcataaaatacaaccaaaatcaacgggcttgaccttaactaccaaccaagaaa |
16277180 |
T |
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| Q |
518 |
agacatgtcttgtctccaacagagtatattattttctttctatattgaataagcctgtatattcagacagatatttgtgaaagagttaaattaattaatt |
617 |
Q |
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| T |
16277179 |
agacatgtcttgtctccaacagagtatattattttctttctatattgaataagcctgtatattcagacatatatttgtgaaagagttaaattaattaatt |
16277080 |
T |
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| Q |
618 |
ttacctaatatcttctatcttcatatctctttttcttggataaacgtctatcttcat |
674 |
Q |
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| T |
16277079 |
ttacctaatatcttctatcttcatatctctttttcttggataaacgtctatcttcat |
16277023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 16336355 - 16336390
Alignment:
| Q |
41 |
aaaacagaattgaaagactacaaacctgtgccttat |
76 |
Q |
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| T |
16336355 |
aaaacagaattgaaagactacaaacctgtgccttat |
16336390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 16339048 - 16339013
Alignment:
| Q |
41 |
aaaacagaattgaaagactacaaacctgtgccttat |
76 |
Q |
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| T |
16339048 |
aaaacagaattgaaagactacaaatctgtgccttat |
16339013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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