View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_low_10 (Length: 392)
Name: NF16769_low_10
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 1535954 - 1536317
Alignment:
| Q |
7 |
tagattatacttagatttcaacacgtgagattaattaaaactttcaccctgttgggttttttcaagaaaaggtttagattgaaactttgatttgttgatg |
106 |
Q |
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| T |
1535954 |
tagattaaacttagatttcaacacgtgagattaattaaaactttcaccctgttgggttttttcaagaaaaggtttagattgaaactttgatttgttgatg |
1536053 |
T |
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| Q |
107 |
atctcccattaacagggtgtaaggaattcttgtacacatcataagtaacacaaccaacataagtaaggaattccatgtacattgctagtgtatatgcaat |
206 |
Q |
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| T |
1536054 |
atctcccattaacagggtataaggaattcttgtacacatcataagtaacacaaccaacataagtaaggaattccatgtacattgctagtgtatatgcaat |
1536153 |
T |
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| Q |
207 |
gaaatcaccatttggaaattatttcaaatgtttcatttagctggcttcaaaattttgacatgcacgtcatcaatcttccccaaaccaaagttgcatttac |
306 |
Q |
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| T |
1536154 |
gaaatcaccatttggaaattatttcaaatgcttcatttagctggcttcaaaatttttacatgcacgtcatcaatcttccccaaaccaaagttgcatttac |
1536253 |
T |
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| Q |
307 |
atctttatattcttttagctcctccaaatacttttatgtggattttgaatcccttccttacgtc |
370 |
Q |
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| T |
1536254 |
atctttaaattcttttagctcctccaaatacttttatgtggattttgaatcccttccttacgtc |
1536317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 1487383 - 1487492
Alignment:
| Q |
7 |
tagattatacttagatttcaacacgtgagattaattaaaactttcaccctgttgggtttt-ttcaagaaaaggtttagattgaaactttgatttgttgat |
105 |
Q |
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| T |
1487383 |
tagattaaacttagatttcaaaacgtgagatcaattaaaactttcacccccttgggtttttttcaagaaaaggtttagattgaaacttcgatttgttgat |
1487482 |
T |
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| Q |
106 |
gatctcccat |
115 |
Q |
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| T |
1487483 |
gatctcccat |
1487492 |
T |
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