View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16769_low_11 (Length: 377)

Name: NF16769_low_11
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16769_low_11
NF16769_low_11
[»] chr8 (6 HSPs)
chr8 (1-360)||(24632836-24633196)
chr8 (13-95)||(42897117-42897199)
chr8 (12-96)||(33602738-33602822)
chr8 (12-95)||(33593099-33593182)
chr8 (102-151)||(22462638-22462687)
chr8 (218-254)||(24679608-24679644)
[»] chr3 (8 HSPs)
chr3 (93-321)||(1463163-1463391)
chr3 (93-315)||(19658652-19658874)
chr3 (110-315)||(19630830-19631038)
chr3 (12-95)||(24875453-24875536)
chr3 (218-269)||(18696197-18696248)
chr3 (99-151)||(15960515-15960567)
chr3 (216-294)||(12411005-12411083)
chr3 (13-70)||(46306745-46306802)
[»] chr5 (4 HSPs)
chr5 (12-96)||(22458661-22458745)
chr5 (12-95)||(22449198-22449281)
chr5 (111-270)||(20966816-20966978)
chr5 (13-97)||(33956668-33956754)
[»] chr1 (7 HSPs)
chr1 (12-95)||(21924544-21924627)
chr1 (10-86)||(26907549-26907625)
chr1 (102-151)||(18613834-18613883)
chr1 (13-70)||(14273186-14273243)
chr1 (13-70)||(14284592-14284649)
chr1 (222-279)||(27857580-27857637)
chr1 (218-270)||(9345576-9345628)
[»] scaffold0334 (1 HSPs)
scaffold0334 (12-95)||(13530-13613)
[»] scaffold0053 (1 HSPs)
scaffold0053 (12-95)||(3230-3313)
[»] chr7 (8 HSPs)
chr7 (12-95)||(13868285-13868368)
chr7 (216-297)||(16106321-16106402)
chr7 (180-269)||(16308959-16309048)
chr7 (13-70)||(14635911-14635968)
chr7 (13-70)||(14645611-14645668)
chr7 (13-70)||(15948543-15948600)
chr7 (13-70)||(33293333-33293390)
chr7 (111-151)||(16106213-16106253)
[»] chr4 (4 HSPs)
chr4 (216-279)||(17527624-17527687)
chr4 (218-296)||(13694965-13695043)
chr4 (13-70)||(33309983-33310040)
chr4 (218-270)||(14903662-14903714)
[»] scaffold0758 (1 HSPs)
scaffold0758 (219-297)||(3126-3204)
[»] scaffold0498 (1 HSPs)
scaffold0498 (161-297)||(4452-4588)
[»] chr2 (3 HSPs)
chr2 (218-266)||(24303294-24303342)
chr2 (111-297)||(21916867-21917056)
chr2 (221-269)||(25119601-25119649)
[»] scaffold0920 (1 HSPs)
scaffold0920 (13-70)||(1780-1837)
[»] scaffold0773 (1 HSPs)
scaffold0773 (13-70)||(1860-1917)
[»] chr6 (6 HSPs)
chr6 (218-279)||(18092693-18092754)
chr6 (216-259)||(17446937-17446980)
chr6 (13-70)||(22064632-22064689)
chr6 (13-70)||(22065264-22065321)
chr6 (13-70)||(23883464-23883521)
chr6 (99-151)||(17446819-17446871)
[»] scaffold1339 (1 HSPs)
scaffold1339 (99-267)||(1093-1261)
[»] scaffold1409 (1 HSPs)
scaffold1409 (18-70)||(369-421)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 24633196 - 24632836
Alignment:
Q  1 atatttttaacaaaaaa-tcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaacagtga 99  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24633196 atatttttaacaaaaaaatcattagtagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaacagtga 24633097  T
Q  100 catcattggtatagatgaagaattatgtgatattcttgaagatggtgttggtcttactttggatgaagaaggtgtagttcttgatagaaataaatacata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24633096 catcattggtatagatgaagaattatgtgatattcttgaagatggtgttggtcttactttggatgaagaaggtgtagttcttgatagaaataaatacata 24632997  T
Q  200 tatgctcatcagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaaatcca 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632996 tatgctcaacagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaaatcca 24632897  T
Q  300 ccactaaggttatgttcaagtctttgcgtttaaactataaaggcaaccaaaaggttaaaga 360  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24632896 ccactaaggttattttcaagtctttgcgtttaaactataaaggcaaccaaaaggttaaaga 24632836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 42897117 - 42897199
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42897117 aaaaatcattagtagataacaatatataattaaataaatatgtttgtaatccttaaaataataaaaaggattttgcttcaaca 42897199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 33602738 - 33602822
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaacag 96  Q
    |||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33602738 aaaaaatcattagtagttaacaatatataattaaataaatatgtttgtaatccttaaaataataaaaaggattttgcttcaacag 33602822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 33593099 - 33593182
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    |||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33593099 aaaaaatcattagtagttaacaatatataattaaataaatatgtttgtaatccttaaaataataaaaaggattttgcttcaaca 33593182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 22462638 - 22462687
Alignment:
Q  102 tcattggtatagatgaagaattatgtgatattcttgaagatggtgttggt 151  Q
    |||| ||| ||||||||||| |||| ||||||||||||||||||||||||    
T  22462638 tcatgggtttagatgaagaactatgggatattcttgaagatggtgttggt 22462687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 24679608 - 24679644
Alignment:
Q  218 tacaagaaacatcacaagattagaagaattcttgttg 254  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  24679608 tacaagaaacatcacaagatcagaggaattcttgttg 24679644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 1463391 - 1463163
Alignment:
Q  93 acagtgacatcattggtatagatgaagaattatgtgatattcttgaagatggtgttggtcttactttggatgaagaaggtgtagttcttgatagaaataa 192  Q
    ||||| |||| ||||| ||| ||||||| ||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||| | |||||||||| ||    
T  1463391 acagtcacattattggcataaatgaagagttatgggatattctcgaagatgatgttgatcttactttggatgaagaaggtgtagctattgatagaaagaa 1463292  T
Q  193 atacatatatgctcatcagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgac 292  Q
    | |||    ||||||  ||||  | |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||| || ||||     
T  1463291 acacaatgttgctcagaagaagctctacaagaaacatcacaagatcagaggaattcttgttgttgcattacctcacaaagaatacttgaagatgagtgaa 1463192  T
Q  293 aaatccaccactaaggttatgttcaagtc 321  Q
    ||||| || ||||| ||||||||||||||    
T  1463191 aaatctactactaaagttatgttcaagtc 1463163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 315
Target Start/End: Original strand, 19658652 - 19658874
Alignment:
Q  93 acagtgacatcattggtatagatgaagaattatgtgatattcttgaagatggtgttggtcttactttggatgaagaaggtgtagttcttgatagaaataa 192  Q
    ||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||||||| ||    
T  19658652 acagtcacaacattggcatagatgaagaattatgggatattcttgaagatggtgttgatcttgttttggatgaagaaggtgtagtttttgatagaaagaa 19658751  T
Q  193 atacatatatgctcatcagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgac 292  Q
    | |||    | ||||  ||||  | |||||||| |||| |||||| ||| |||||||||||| |||| ||||| ||||||||||||| ||| || |||||    
T  19658752 acacaatgctactcagaagaatctctacaagaaccatcgcaagatcagaggaattcttgttgctgctctaccttacaaagaatacttaaagatgagtgac 19658851  T
Q  293 aaatccaccactaaggttatgtt 315  Q
    ||||| || ||||| | ||||||    
T  19658852 aaatctactactaaagctatgtt 19658874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 110 - 315
Target Start/End: Original strand, 19630830 - 19631038
Alignment:
Q  110 atagatgaagaattatgtgatattcttgaagatggtgttggtcttactttggatgaagaaggtgtagttcttgatagaaataaatacatatatgctcatc 209  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||| ||| ||| |||    | || |      
T  19630830 atagatgaagaattatgggatattcttgaagatggtgttgatcttgttttggatgaagaaggtgtagttgttgatataaagaaacacactgctacttaga 19630929  T
Q  210 aga--aag-tttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaaatccaccactaa 306  Q
    |||  ||| | ||||||||||||||||||||  || ||||||||||||||||| ||||||||||||||| ||| ||| || |||||||||| ||  ||||    
T  19630930 agaagaagctctacaagaaacatcacaagatcggaggaattcttgttgttgctctacctcacaaagaatgcttgaagatgagtgacaaatctactgctaa 19631029  T
Q  307 ggttatgtt 315  Q
     ||||||||    
T  19631030 agttatgtt 19631038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 24875453 - 24875536
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24875453 aaaaaatcattagtagataacaatatataattaaataaatatgtttgtaatccttaaaataataaaaaggattttgcttcaaca 24875536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 18696197 - 18696248
Alignment:
Q  218 tacaagaaacatcacaagattagaagaattcttgttgttgctttacctcaca 269  Q
    |||||||||||||||||||| ||| |||||||||||| |||||| |||||||    
T  18696197 tacaagaaacatcacaagatcagaggaattcttgttgctgctttgcctcaca 18696248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 15960515 - 15960567
Alignment:
Q  99 acatcattggtatagatgaagaattatgtgatattcttgaagatggtgttggt 151  Q
    ||||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||    
T  15960515 acatcatgggtttagatgatgaactatgggatattcttgaagatggtgttggt 15960567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 12411005 - 12411083
Alignment:
Q  216 tttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaa 294  Q
    |||| ||||||||||||||||| ||| | |||||||||| |||| |||||||  || ||||||| ||| || |||||||    
T  12411005 tttataagaaacatcacaagatcagacgcattcttgttgctgctctacctcaacaataatacttgaagatgagtgacaa 12411083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 46306745 - 46306802
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  46306745 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 46306802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 22458661 - 22458745
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaacag 96  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22458661 aaaaaatcattagtagataacaatatataattaaataaatatgtttgtaatccttaaaataataaaaaggattttgcttcaacag 22458745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 22449198 - 22449281
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22449198 aaaaaatcattagtagataacaatatataattaaataaatatgtttgtaatccttaaaataataaaaaggattttgcttcaaca 22449281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 270
Target Start/End: Complemental strand, 20966978 - 20966816
Alignment:
Q  111 tagatgaagaattatgtgatattcttgaagatggtgttggt--cttact-ttggatgaagaaggtgtagttcttgatagaaataaatacatatatgctca 207  Q
    ||||||||||| |||| ||| | ||||||||||||||||||  |||  | || ||||||||| | || ||| |||||||||  ||| ||||   ||||||    
T  20966978 tagatgaagaactatgggatgtgcttgaagatggtgttggtgacttggtattagatgaagaatgagttgttgttgatagaacgaaacacattgctgctca 20966879  T
Q  208 tcagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaa 270  Q
      ||||  | |||||||||||||||||||||||| |||||||||||| | |||| ||||||||    
T  20966878 gaagaatctgtacaagaaacatcacaagattagaggaattcttgttgcttctttgcctcacaa 20966816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 33956668 - 33956754
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataa-aaaggattttg-tttcaacagt 97  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| |||||| |  || ||||||||||| ||||||||||    
T  33956668 aaaattcattagtagataacaatataaattaaaataaatatgtttgttatctttaaaacatcaataaaggattttgctttcaacagt 33956754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 21924544 - 21924627
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21924544 aaaaaatcattagtagataacaatatataattaaataaatatgtttgtaatccttaaaataataaaaaggattttgcttcaaca 21924627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 26907549 - 26907625
Alignment:
Q  10 acaaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggatttt 86  Q
    |||||||||||||| ||||||||||  |  | | |||||||||||||||||||||||||||||||||||||||||||    
T  26907549 acaaaaaatcattagtagataacaaggtggaataaactaaatatgtttgtaatccttaaaataataaaaaggatttt 26907625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 18613883 - 18613834
Alignment:
Q  102 tcattggtatagatgaagaattatgtgatattcttgaagatggtgttggt 151  Q
    |||| ||| ||||||||||| |||| ||||||||||||||||||||||||    
T  18613883 tcatgggtttagatgaagaactatgggatattcttgaagatggtgttggt 18613834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 14273186 - 14273243
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  14273186 aaaattcattagtagataacaatataaattaaattaaatatgtttgttatctttaaaa 14273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 14284592 - 14284649
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  14284592 aaaattcattagtagataacaatataaattaaattaaatatgtttgttatctttaaaa 14284649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 27857637 - 27857580
Alignment:
Q  222 agaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatactt 279  Q
    |||||||||||||||| ||| | |||||||||| |||||| |||||||| || |||||    
T  27857637 agaaacatcacaagatcagaggcattcttgttgatgctttgcctcacaaggagtactt 27857580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 9345628 - 9345576
Alignment:
Q  218 tacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaa 270  Q
    |||||||||||||||||||| ||| | |||||||||  |||||| ||||||||    
T  9345628 tacaagaaacatcacaagatcagaggcattcttgttactgctttgcctcacaa 9345576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 13530 - 13613
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    |||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  13530 aaaaaatcattagtagataacaatatataattaaataaatgtgtttgtaatccttaaaataataaaaaggattttgcttcaaca 13613  T

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Target: scaffold0053 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 3230 - 3313
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3230 aaaaaatcattagtagataacaatatataattaaataaatatgtttgtaatccttaaaatagtaaaaaggattttgcttcaaca 3313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 13868368 - 13868285
Alignment:
Q  12 aaaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaataataaaaaggattttgtttcaaca 95  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| |||||||    
T  13868368 aaaaaatcattagtagataacaatatataattaaataaatatgtttgtaatccttaaaataataaaaagaattttgcttcaaca 13868285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 16106321 - 16106402
Alignment:
Q  216 tttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaaatc 297  Q
    |||||||||||||||||||||| | | | |||||||||| |||||| |||||||| || ||||| ||| || |||| |||||    
T  16106321 tttacaagaaacatcacaagataataggcattcttgttgctgcttttcctcacaaggagtacttgaagatgagtgataaatc 16106402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 16308959 - 16309048
Alignment:
Q  180 ttgatagaaataaatacatatatgctcatcagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcaca 269  Q
    ||||||||||||||||||    ||||||  ||||  | |||||||||||||||||||| ||| | |||||||||| |||||| |||||||    
T  16308959 ttgatagaaataaatacactgctgctcagaagaagttgtacaagaaacatcacaagatcagaggcattcttgttgctgctttgcctcaca 16309048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 14635911 - 14635968
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  14635911 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 14635968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 14645611 - 14645668
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  14645611 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 14645668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 15948543 - 15948600
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  15948543 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 15948600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 33293333 - 33293390
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  33293333 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 33293390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 16106213 - 16106253
Alignment:
Q  111 tagatgaagaattatgtgatattcttgaagatggtgttggt 151  Q
    ||||||||||| |||||||| | ||||||||||||||||||    
T  16106213 tagatgaagaactatgtgatgtccttgaagatggtgttggt 16106253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 17527624 - 17527687
Alignment:
Q  216 tttacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatactt 279  Q
    ||||||||||| |||||||||| ||| | |||||||||| ||||||||||||||||||||||||    
T  17527624 tttacaagaaatatcacaagatcagaggcattcttgttgctgctttacctcacaaagaatactt 17527687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 13695043 - 13694965
Alignment:
Q  218 tacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaaat 296  Q
    |||||||||||||||||||| |||   |||||||||| |||||||||||||||||| ||||| ||| || |||| ||||    
T  13695043 tacaagaaacatcacaagatcagagacattcttgttgctgctttacctcacaaagagtacttgaagatgagtgataaat 13694965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 33309983 - 33310040
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  33309983 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 33310040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 14903662 - 14903714
Alignment:
Q  218 tacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaa 270  Q
    |||| ||||||||||||||| | ||| |||||||||| |||||| ||||||||    
T  14903662 tacatgaaacatcacaagatcataagcattcttgttgctgctttgcctcacaa 14903714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 3204 - 3126
Alignment:
Q  219 acaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaaatc 297  Q
    ||||||||||||||||||||||| | |||||||||| |||||| |||||||| || ||||| ||| || |||| |||||    
T  3204 acaagaaacatcacaagattagaggcattcttgttgctgctttgcctcacaaggagtactttaagatgagtgataaatc 3126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 4452 - 4588
Alignment:
Q  161 gatgaagaaggtgtagttcttgatagaaataaatacatatatgctcatcagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctt 260  Q
    |||||||||||||| ||  ||||||| || ||| ||||   ||||||  ||||  | |||||||||||||||||| | ||| | |||||||||| ||||     
T  4452 gatgaagaaggtgttgtcgttgataggaagaaacacattgctgctcagaagaagatgtacaagaaacatcacaagttcagaggcattcttgttgctgctc 4551  T
Q  261 tacctcacaaagaatacttcaagttgggtgacaaatc 297  Q
    ||||||||||||| ||||| ||| || |||| |||||    
T  4552 tacctcacaaagagtacttgaagatgagtgataaatc 4588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 24303294 - 24303342
Alignment:
Q  218 tacaagaaacatcacaagattagaagaattcttgttgttgctttacctc 266  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  24303294 tacaagaaacatcacaagatgagaggaattcttgttgctgctttacctc 24303342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 21916867 - 21917056
Alignment:
Q  111 tagatgaagaattatgtgatattcttgaagatggtgttggt--cttact-ttggatgaagaaggtgtagttcttgatagaaataaatacatatatgctca 207  Q
    ||||||||||| |||| ||| ||||||||||||||||||||  |||  | ||  |||||||||| || | | |||||||||| ||| ||||   |||| |    
T  21916867 tagatgaagaactatgggatgttcttgaagatggtgttggtgacttggtgttacatgaagaaggagttgatgttgatagaaagaaacacattgctgctta 21916966  T
Q  208 tcagaaagtttacaagaaacatcacaagattagaaga-attcttgttgttgctttacctcacaaagaatacttcaagttgggtgacaaatc 297  Q
      ||||| | |||||||||||||||||||| | |||| |||||||||| |||||| ||||| || || ||||| ||| || |||| |||||    
T  21916967 gaagaaactgtacaagaaacatcacaagatca-aagacattcttgttgctgctttgcctcataaggagtacttgaagatgagtgataaatc 21917056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 25119601 - 25119649
Alignment:
Q  221 aagaaacatcacaagattagaagaattcttgttgttgctttacctcaca 269  Q
    ||||||||||||||||| ||| | |||||||||| |||||| |||||||    
T  25119601 aagaaacatcacaagatcagaggcattcttgttgctgctttgcctcaca 25119649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 1837 - 1780
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||||||| || ||||||||||||| ||| ||||||    
T  1837 aaaattcattagtagataacaatatatattaaattaaatatgtttgttatctttaaaa 1780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0773 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 1917 - 1860
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| |||||||||||||||| ||| ||||||    
T  1917 aaaattcattagtagataacaatataaattaaactaaatatgtttgttatctttaaaa 1860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 18092693 - 18092754
Alignment:
Q  218 tacaagaaacatcacaagattagaagaattcttgttgttgctttacctcacaaagaatactt 279  Q
    |||||||||||||||||||| ||| ||| |||||||| |||| |||||||||  ||||||||    
T  18092693 tacaagaaacatcacaagatcagaggaaatcttgttgctgctctacctcacatggaatactt 18092754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 17446937 - 17446980
Alignment:
Q  216 tttacaagaaacatcacaagattagaagaattcttgttgttgct 259  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||    
T  17446937 tttacaagaaacatcacaagatcagatgaattcttgttgctgct 17446980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 22064632 - 22064689
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  22064632 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 22064689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 22065321 - 22065264
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  22065321 aaaattcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 22065264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 23883521 - 23883464
Alignment:
Q  13 aaaaatcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||| |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  23883521 aaaattcattagtagataacaatatagattaaagtaaatatgtttgttatctttaaaa 23883464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 17446819 - 17446871
Alignment:
Q  99 acatcattggtatagatgaagaattatgtgatattcttgaagatggtgttggt 151  Q
    ||||||| ||| ||||||| ||| | || ||||||||||||||||||||||||    
T  17446819 acatcatgggtttagatgatgaactttgggatattcttgaagatggtgttggt 17446871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 267
Target Start/End: Complemental strand, 1261 - 1093
Alignment:
Q  99 acatcattggtatagatgaagaattatgtgatattcttgaagatggtgttggtcttactttggatgaagaaggtgtagttcttgatagaaataaatacat 198  Q
    ||||||||||||||||||||||| |  | || ||  ||||| ||||||||| ||||||  | |||||| ||||||||||| |||| ||||| ||| ||||    
T  1261 acatcattggtatagatgaagaacttcgggacatcattgaaaatggtgttgatcttacactagatgaaaaaggtgtagttgttgacagaaagaaacacat 1162  T
Q  199 atatgctcatcagaaagtttacaagaaacatcacaagattagaagaattcttgttgttgctttacctca 267  Q
       |||| |  | ||  |||||||||||||||||||  | ||| || || |||||| | ||||||||||    
T  1161 tgttgcttagaaaaagatttacaagaaacatcacaaagtcagaggacttattgttgcttctttacctca 1093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1409 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1409
Description:

Target: scaffold1409; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 369 - 421
Alignment:
Q  18 tcattaatagataacaatatatatttaactaaatatgtttgtaatccttaaaa 70  Q
    |||||| |||||||||||||| ||| || ||||||||||||| ||| ||||||    
T  369 tcattagtagataacaatataaattaaagtaaatatgtttgttatctttaaaa 421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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