View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_low_12 (Length: 368)
Name: NF16769_low_12
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 45142892 - 45143092
Alignment:
| Q |
13 |
catcatcttcctttatgtccattacnnnnnnnntcaactgggaagaggaatttgtcgacattcaccaaaatgtcttttgctattccggcggggcatttga |
112 |
Q |
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| T |
45142892 |
catcatcttcctttatgtccattacaaaaaaattcaactgggaagaggaatttgtcgacattcaccaaaatgtcttttgctattcgggcggggcatttga |
45142991 |
T |
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| Q |
113 |
tagatttacagccacttgtaatgtcattcttgtatctgtcatatctacgttacccactctcttgagtacagataaaggaataagacttatttatttttta |
212 |
Q |
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| T |
45142992 |
tagatttacagccacttttaatgtcattcttgtatctgtcatatctacgttacccactctcttgagtacagataaaggaataagacttatttatttttta |
45143091 |
T |
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| Q |
213 |
t |
213 |
Q |
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| T |
45143092 |
t |
45143092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 352
Target Start/End: Original strand, 45143652 - 45143725
Alignment:
| Q |
279 |
ttgcaaggaaatgtgagaattctacattcaaattaaagaaagaactggtgaattgagagaattcacgatgatta |
352 |
Q |
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| T |
45143652 |
ttgcaaggaaatgtgacaattctacattcaaattaaagaaagaactggtgaattgagagaattcacgatgatta |
45143725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 45143516 - 45143571
Alignment:
| Q |
222 |
tggaggtttatgtgggaaacc-aagagagagtctattattgacatagcaaactata |
276 |
Q |
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| T |
45143516 |
tggaggtttatgtgggaaacccaagagagagtctattattgacatagcaaactata |
45143571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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