View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_low_14 (Length: 325)
Name: NF16769_low_14
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 34479028 - 34478738
Alignment:
| Q |
18 |
agttggatgtttaaagcagatagagcggaacgagtttgcagcatggaggggaatccagggnnnnnnngatcaccggagtaaattaaacaagtaattatgg |
117 |
Q |
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| T |
34479028 |
agttggatgtttaaagcagatagagcggtacgagtttgcagcatggaggggaatccagggaaaaaaagatcaccggagtaaattaaacaagtaattatgg |
34478929 |
T |
|
| Q |
118 |
gtcattggattnnnnnnntaaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaatagattccgatacaagnnnnnnnntctaatatt |
217 |
Q |
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| T |
34478928 |
gttattggattaaaaaaataaacggttgagatttagtgtcaacgaatttgttgacacatgatgtcaatagattccgatacaagaaaaaagatctaatatt |
34478829 |
T |
|
| Q |
218 |
tacttcgaattgtttttagttacactttgctatagcctatggcaatctcggccaaaacatgtaagggaaaaataaaatgcaagaactacct |
308 |
Q |
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| T |
34478828 |
tacttcgaattgtttttagttacactttgctatagcctatggcaatctcggccaaaacatgtaagggaaaaataaaatgcaagaactacct |
34478738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 53147982 - 53147943
Alignment:
| Q |
85 |
gatcaccggagtaaattaaacaagtaattatgggtcattg |
124 |
Q |
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| T |
53147982 |
gatcaccggagtaaattaaacaagtaattatggatcattg |
53147943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 53148608 - 53148654
Alignment:
| Q |
139 |
acggttgagatttaatgtcaacgaatttgttgacacatgatgtcaat |
185 |
Q |
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| T |
53148608 |
acggttgagatttggtgtcaacgaatctgttgacacctgatgtcaat |
53148654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 7842528 - 7842572
Alignment:
| Q |
141 |
ggttgagatttaatgtcaacgaatttgttgacacatgatgtcaat |
185 |
Q |
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| T |
7842528 |
ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaat |
7842572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 17071282 - 17071234
Alignment:
| Q |
136 |
taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa |
184 |
Q |
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| T |
17071282 |
taaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaa |
17071234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 34600319 - 34600271
Alignment:
| Q |
136 |
taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa |
184 |
Q |
| |
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| T |
34600319 |
taaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaa |
34600271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 33586425 - 33586382
Alignment:
| Q |
148 |
atttaatgtcaacgaatttgttgacacatgatgtcaatagattc |
191 |
Q |
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||||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
33586425 |
atttagtgtcaacgaatttgttgacacctaatgtcaatagattc |
33586382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 18174663 - 18174711
Alignment:
| Q |
136 |
taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa |
184 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||||||||| |
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|
| T |
18174663 |
taaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaa |
18174711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 26587207 - 26587159
Alignment:
| Q |
136 |
taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa |
184 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||| ||||||||| |
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| T |
26587207 |
taaacggttgagatttgatgtcaacgaatctattgacacctgatgtcaa |
26587159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 48764533 - 48764487
Alignment:
| Q |
139 |
acggttgagatttaatgtcaacgaatttgttgacacatgatgtcaat |
185 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
48764533 |
acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaat |
48764487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 17606378 - 17606423
Alignment:
| Q |
139 |
acggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa |
184 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||| |||| |
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| T |
17606378 |
acggttgagatttaatgttaacgaatctgttgacacctgatatcaa |
17606423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 21496977 - 21497025
Alignment:
| Q |
136 |
taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa |
184 |
Q |
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|||||||||||||||| |||||||||||| |||||||| || |||||| |
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|
| T |
21496977 |
taaacggttgagatttggtgtcaacgaattcgttgacacctgttgtcaa |
21497025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 3623233 - 3623185
Alignment:
| Q |
136 |
taaacggttgagatttaatgtcaacgaatttgttgacacatgatgtcaa |
184 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||| ||||||||| |
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| T |
3623233 |
taaacggttgagatttggtgtcaaagaattcgttgacacctgatgtcaa |
3623185 |
T |
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