View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16769_low_15 (Length: 304)

Name: NF16769_low_15
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16769_low_15
NF16769_low_15
[»] chr4 (5 HSPs)
chr4 (37-281)||(43592979-43593224)
chr4 (67-281)||(19111497-19111706)
chr4 (188-270)||(52374736-52374818)
chr4 (173-249)||(50377778-50377854)
chr4 (32-69)||(43592175-43592212)
[»] chr6 (11 HSPs)
chr6 (67-281)||(18767139-18767349)
chr6 (67-281)||(21392744-21392954)
chr6 (62-268)||(20025221-20025424)
chr6 (67-281)||(14463956-14464165)
chr6 (96-270)||(21683644-21683811)
chr6 (67-281)||(15906480-15906689)
chr6 (96-270)||(20881416-20881583)
chr6 (101-281)||(18715739-18715914)
chr6 (67-145)||(18785350-18785428)
chr6 (67-249)||(31569780-31569958)
chr6 (114-245)||(23160238-23160365)
[»] scaffold0159 (1 HSPs)
scaffold0159 (55-281)||(36353-36577)
[»] chr2 (4 HSPs)
chr2 (55-281)||(5782890-5783114)
chr2 (64-275)||(13363956-13364162)
chr2 (70-281)||(25417544-25417752)
chr2 (67-281)||(29468138-29468347)
[»] chr1 (6 HSPs)
chr1 (67-281)||(42958079-42958289)
chr1 (55-155)||(18506673-18506773)
chr1 (55-260)||(46352351-46352549)
chr1 (67-249)||(7486800-7486978)
chr1 (192-281)||(19193323-19193412)
chr1 (130-243)||(15722784-15722893)
[»] scaffold0041 (1 HSPs)
scaffold0041 (70-281)||(31720-31926)
[»] chr5 (5 HSPs)
chr5 (67-281)||(42882457-42882666)
chr5 (55-260)||(38925910-38926110)
chr5 (96-270)||(22545234-22545401)
chr5 (67-155)||(32726251-32726339)
chr5 (213-277)||(32726407-32726471)
[»] chr8 (5 HSPs)
chr8 (67-270)||(7964333-7964531)
chr8 (66-269)||(43974097-43974298)
chr8 (67-281)||(8224195-8224404)
chr8 (72-281)||(22932505-22932710)
chr8 (114-156)||(16046673-16046715)
[»] scaffold0214 (4 HSPs)
scaffold0214 (70-281)||(22173-22385)
scaffold0214 (67-153)||(1593-1679)
scaffold0214 (204-249)||(28777-28822)
scaffold0214 (204-249)||(16689-16734)
[»] chr7 (3 HSPs)
chr7 (55-260)||(3568983-3569183)
chr7 (67-243)||(39702535-39702707)
chr7 (170-249)||(1966759-1966838)
[»] scaffold0557 (1 HSPs)
scaffold0557 (67-281)||(6904-7112)
[»] chr3 (1 HSPs)
chr3 (67-249)||(6506463-6506639)
[»] scaffold0054 (1 HSPs)
scaffold0054 (55-260)||(50149-50350)
[»] scaffold0726 (1 HSPs)
scaffold0726 (103-281)||(5162-5332)
[»] scaffold0590 (1 HSPs)
scaffold0590 (172-281)||(9468-9577)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 281
Target Start/End: Original strand, 43592979 - 43593224
Alignment:
Q  37 gcggttgttgtatatagagctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgcta 136  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43592979 gcggttgttgtatacagggctcttccattttatttctccaagatttctcaaataagaacatcacttatatgctccagtttaattaacattccacttgcta 43593078  T
Q  137 tgttacattgactttttcaaac-aatnnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtctt 235  Q
    |||||||||||||||||||||| ||        |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  43593079 tgttacattgactttttcaaacaaaaaaaaaaactcgcaaagtatgaataactgatatgactaatgtataaatattatttcactctttttgaaatgtctt 43593178  T
Q  236 cgtcctttgcaagatttggatgtgttatcaaagttctgttcttatt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43593179 cgtcctttgcaagatttggatgtgttatcaaagttctgttcttatt 43593224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 19111497 - 19111706
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| ||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||          
T  19111497 tatttctccaacatttctcaaacaacaacatcaattatatgccccaatttaattaacattccacttgctatgtcacattgactttttcaatcaa----aa 19111592  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       |||||||||||| | || |||||||| | |||| |||||||| |||||||||||||||||||| ||| ||||||| ||||  |  ||||||||||||    
T  19111593 atatcgcaaagtatg-agaagtgatatgattaatgtgtaaatattctttcactctttttgaaatgttttcttcctttgaaagacataaatgtgttatcaa 19111691  T
Q  267 agttctgttcttatt 281  Q
    |||| | ||||||||    
T  19111692 agtttttttcttatt 19111706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 52374818 - 52374736
Alignment:
Q  188 tgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagtt 270  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||  |  ||||||||||||||||    
T  52374818 tgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaagtt 52374736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 50377854 - 50377778
Alignment:
Q  173 caaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaaga 249  Q
    ||||||||||| |  ||||||| || |||| |||| ||| ||||||| ||||| ||||||||||||||||| |||||    
T  50377854 caaagtatgaaaaggtgatatgcctaatgtgtaaacattttttcactatttttaaaatgtcttcgtcctttacaaga 50377778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 43592175 - 43592212
Alignment:
Q  32 gggaagcggttgttgtatatagagctcttccattttat 69  Q
    ||||||||||||||||||| || |||||||||||||||    
T  43592175 gggaagcggttgttgtatacagggctcttccattttat 43592212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 18767139 - 18767349
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||          
T  18767139 tatttctccaagatttctcaaacaacaatatcacttatatgctccagtttaattaacattcctcttgctatgttacattgaccttttcaatcaa----aa 18767234  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       ||||||||||||||||| |||||||||| ||||  ||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||    
T  18767235 atatcgcaaagtatgaataagtgatatgactaatgtgaaaacattctttcactctttttgaaatgtcttcgtcctttgcaagacttgaatgtgttattaa 18767334  T
Q  267 agttctgttcttatt 281  Q
    |||| ||||||||||    
T  18767335 agttttgttcttatt 18767349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 21392744 - 21392954
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |  ||          
T  21392744 tatttctccaagatttctcaaacaagaacataacttatatgccccagtttaattaacattccacttgctatgttacattgaatttttccatgaa----ga 21392839  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       | ||||||||||||||| ||| |||||| |||| | || ||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  21392840 atattgcaaagtatgaataagtgacatgactaatgtcttaacattctttcactctttttgaaatgccttcgtcctttgcaagacttagatgtgttatcaa 21392939  T
Q  267 agttctgttcttatt 281  Q
    |||||||||| ||||    
T  21392940 agttctgttcctatt 21392954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 62 - 268
Target Start/End: Original strand, 20025221 - 20025424
Alignment:
Q  62 cattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaat 161  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||  ||     
T  20025221 cattatatttctccaagatttctcaaacaagaatatcacttatatgccccagtttaattaacagtcaatttgctatgttacattgactttttcaataaa- 20025319  T
Q  162 nnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgtt 261  Q
            ||||||| ||||||||| |||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||    
T  20025320 --aaaatatcgcaaactatgaataagtgatatgactaatgtgtaaacattctttcattctttttgaaatgtcttcgtcctttgcaagacttggatgtttt 20025417  T
Q  262 atcaaag 268  Q
    |||||||    
T  20025418 atcaaag 20025424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 67 - 281
Target Start/End: Complemental strand, 14464165 - 14463956
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||  ||          
T  14464165 tatttctccaagatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgtcacattggctttttcaattaa----aa 14464070  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       || ||||||||| | || |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||  |  || |||||||||    
T  14464069 atatctcaaagtatg-agaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatatgttatcaa 14463971  T
Q  267 agttctgttcttatt 281  Q
    |||| ||||||||||    
T  14463970 agttttgttcttatt 14463956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 96 - 270
Target Start/End: Complemental strand, 21683811 - 21683644
Alignment:
Q  96 atcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnctcgcaaagtatgaataattgatatga 195  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||         || |||||||||||||| ||||||||    
T  21683811 atcacttatatgctccggtttaattaacattccatttgctatattacattgactttttcaatcaaaaata----tcccaaagtatgaataagtgatatga 21683716  T
Q  196 ctcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagtt 270  Q
    || |||| |||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  21683715 ctaatgtgtaaatattctttcactctttgtgaaatg---tcgtcctttgcaagatttggatgtgttatcaaagtt 21683644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 15906480 - 15906689
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| ||||| ||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||          
T  15906480 tatttctccaacatttcgcaaacaacaacctcaattatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaa----aa 15906575  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       ||| |||||||| | || | |||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||  |  ||||||||||||    
T  15906576 atatcgaaaagtatg-agaagttatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaa 15906674  T
Q  267 agttctgttcttatt 281  Q
    | || ||||||||||    
T  15906675 aattttgttcttatt 15906689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 96 - 270
Target Start/End: Original strand, 20881416 - 20881583
Alignment:
Q  96 atcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnctcgcaaagtatgaataattgatatga 195  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||         || |||||||||||||| ||||||||    
T  20881416 atcacttatatgctccggtttaattaacattccatttgctatattacattgactttttcaatcaaaaata----tcccaaagtatgaataagtgatatga 20881511  T
Q  196 ctcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagtt 270  Q
    || |||| |||||||| ||||||||||| |||||||   |||||||||||||||||||||||| |||||||||||    
T  20881512 ctaatgtgtaaatattctttcactctttgtgaaatg---tcgtcctttgcaagatttggatgtattatcaaagtt 20881583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 281
Target Start/End: Complemental strand, 18715914 - 18715739
Alignment:
Q  101 ttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnctcgcaaagtatgaataattgatatgactcat 200  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||         ||| |||||||||  || |||||||||| ||    
T  18715914 ttatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaaaaata----tcgtaaagtatgag-aagtgatatgactaat 18715820  T
Q  201 gtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagttctgttcttatt 281  Q
    || |||||||| |||||||||||||||||||||||| ||||||  ||||  |  |||||||||||||||| ||||||||||    
T  18715819 gtgtaaatattctttcactctttttgaaatgtcttcttcctttaaaagacataaatgtgttatcaaagttttgttcttatt 18715739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 18785350 - 18785428
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacatt 145  Q
    ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  18785350 tatttctccaaaatttctcaaacaagaacatcacttatatgcctcagtttaattaacattccacttgctatgttacatt 18785428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 31569958 - 31569780
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||| ||| |||||||||||||||||||||| |||||   |||  |||||||||||||||||||||||||||||||||||||||||| |||          
T  31569958 tatttcttcaaaatttctcaaacaagaacatcacatatatatcccaagttaattaacattccacttgctatgttacattgactttttcaatcaa----aa 31569863  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaaga 249  Q
       | |||||||||  |||| ||||  |||| || | |||| ||| ||||||||||||||||||||||| |||||||||||||    
T  31569862 atattgcaaagtatttataaatgatgcgactaatatgtaaacattgtttcactctttttgaaatgtctttgtcctttgcaaga 31569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 23160238 - 23160365
Alignment:
Q  114 tttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatattat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||         || ||||| ||  |||| ||||  |||| ||   |||| ||| |    
T  23160238 tttaattaacattccacttgctatgttacattgactttttcaatcaaaaata----tcacaaagcatttataaatgatgcgactaataggtaaacattgt 23160333  T
Q  214 ttcactctttttgaaatgtcttcgtcctttgc 245  Q
    ||||||||||||||||||||||||||||||||    
T  23160334 ttcactctttttgaaatgtcttcgtcctttgc 23160365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 55 - 281
Target Start/End: Original strand, 36353 - 36577
Alignment:
Q  55 gctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttc 154  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36353 gctcttgcattctatttctccaagatttctcaaacaagaacatcacttatatgccccagtttaattaacattccacttgctatgttacattgactttttc 36452  T
Q  155 aaacaatnnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatatt-atttcactctttttgaaatgtcttcgtcctttgcaagatttg 253  Q
    ||  ||         | ||||||||||||||| ||| |||||| |||| |||| |||  |||||||||||||||||||||| |||||||||||||| ||     
T  36453 aatgaa----aaatattgcaaagtatgaataagtgacatgactaatgtgtaaacattcttttcactctttttgaaatgtctacgtcctttgcaagacttt 36548  T
Q  254 gatgtgttatc-aaagttctgttcttatt 281  Q
    ||||||||||| |||||||||||||||||    
T  36549 gatgtgttatcaaaagttctgttcttatt 36577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 55 - 281
Target Start/End: Original strand, 5782890 - 5783114
Alignment:
Q  55 gctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttc 154  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5782890 gctcttgcattctatttctccaagatttctcaaacaagaacatcacttatatgccccagtttaattaacattccacttgctatgttacattgactttttc 5782989  T
Q  155 aaacaatnnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatatt-atttcactctttttgaaatgtcttcgtcctttgcaagatttg 253  Q
    ||  ||         | ||||||||||||||| ||| |||||| |||| |||| |||  |||||||||||||||||||||| |||||||||||||| ||     
T  5782990 aatgaa----aaatattgcaaagtatgaataagtgacatgactaatgtgtaaacattcttttcactctttttgaaatgtctacgtcctttgcaagacttt 5783085  T
Q  254 gatgtgttatc-aaagttctgttcttatt 281  Q
    ||||||||||| |||||||||||||||||    
T  5783086 gatgtgttatcaaaagttctgttcttatt 5783114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 275
Target Start/End: Original strand, 13363956 - 13364162
Alignment:
Q  64 ttttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnn 163  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||| |||||| |||||||||||||||||||||| |||       
T  13363956 ttttatttctccaagatttgtcaaacaagaacaccacttatatgccccagtt-aattaacatttcacttgttatgttacattgactttttcaatcaaaaa 13364054  T
Q  164 nnnnnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttat 263  Q
          ||||||||||||||||| |||||||| | |||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  13364055 ta----tcgcaaagtatgaataagtgatatgattaatgtgtaaatattttttcactctttttgaaatgtcttcgtcctttgaaagacttggatgtgttat 13364150  T
Q  264 caaagttctgtt 275  Q
    ||||||| ||||    
T  13364151 caaagttttgtt 13364162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 70 - 281
Target Start/End: Complemental strand, 25417752 - 25417544
Alignment:
Q  70 ttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnc 169  Q
    |||||||| ||||||||||||| |||||||||||||||| |||| ||  ||||||||||||||||||||||||||  |||||||    ||||            
T  25417752 ttctccaaaatttctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttacatcaactttttt---caatcaaaaata 25417656  T
Q  170 tcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagt 269  Q
    || |||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25417655 tctcaaagtatgaataagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgcaagacttggatgtgttatcaaagt 25417556  T
Q  270 tctgttcttatt 281  Q
    | ||||||||||    
T  25417555 tttgttcttatt 25417544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 29468138 - 29468347
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||          
T  29468138 tatttctccaacatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaa----aa 29468233  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       |||||||||||| | || |||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||| ||||  |  ||||||||||||    
T  29468234 atatcgcaaagtatg-agaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcatttgaaagacataaatgtgttatcaa 29468332  T
Q  267 agttctgttcttatt 281  Q
    |||| ||||||||||    
T  29468333 agttttgttcttatt 29468347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 42958079 - 42958289
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||  ||          
T  42958079 tatttctccaaaatttctcaaacaagaacatcacctatatgccccagtttaattaacattccacttactatgttacattgactatctcaataaaaaata- 42958177  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       | |||| |||||||||| |||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42958178 ---ttgcaatgtatgaataagtgatatgactaatgtgtaaacattctttcactctttttgaaatgtcttcgtcctttgcaagacttggatgtgttatcaa 42958274  T
Q  267 agttctgttcttatt 281  Q
    |||| ||||||||||    
T  42958275 agttttgttcttatt 42958289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 18506773 - 18506673
Alignment:
Q  55 gctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttc 154  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18506773 gctcttgccttttatttctccaagatttctcaaacaagaacatcacttatatgcaccagtttaattaacattccacttgctatgttacattgactttttc 18506674  T
Q  155 a 155  Q
    |    
T  18506673 a 18506673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 55 - 260
Target Start/End: Complemental strand, 46352549 - 46352351
Alignment:
Q  55 gctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttc 154  Q
    |||||| | ||||||||||| ||||||||| ||||||||| |||||||||   | ||| |||||||||||||| ||||||||||||||||||||||||||    
T  46352549 gctcttgccttttatttctcaaagatttctaaaacaagaatatcacttat---ccccaatttaattaacattcaacttgctatgttacattgactttttc 46352453  T
Q  155 aaacaatnnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttgg 254  Q
    || |||         || |||| ||||||||| |||||||||| |||| |||||||| ||||||| ||||||||||||||| ||| ||| ||||| ||||    
T  46352452 aatcaa----aaatatcacaaattatgaataagtgatatgactaatgtgtaaatattctttcactatttttgaaatgtctttgtcattttcaagacttgg 46352357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 7486800 - 7486978
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    |||| |||||| |||||||||||||||||||||| |||||   |||  |||||||||||||||||||||||||||||||||||||||||| |||          
T  7486800 tattactccaaaatttctcaaacaagaacatcacatatatatcccaagttaattaacattccacttgctatgttacattgactttttcaatcaa----aa 7486895  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaaga 249  Q
       | |||||||||  |||| ||||  |||| || | |||| ||| |||||||||||||||||||||| ||||||||||||||    
T  7486896 atattgcaaagtatttataaatgatgcgactaatatgtaaacattgtttcactctttttgaaatgtctccgtcctttgcaaga 7486978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 19193323 - 19193412
Alignment:
Q  192 atgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagttctgttcttatt 281  Q
    |||||| |||| |||||||| ||| ||||||||| ||||||||||||||||||||| | ||||| ||||| |||||||| ||||||||||    
T  19193323 atgactaatgtgtaaatattcttttactctttttaaaatgtcttcgtcctttgcaaaacttggacgtgttgtcaaagttttgttcttatt 19193412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 15722784 - 15722893
Alignment:
Q  130 cttgctatgttacattgactttttcaaacaatnnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaa 229  Q
    ||||||||||||||||||||||||||| |||         |||||||||||||| |  |||| || || |||| |||| ||| ||||||||||||| |||    
T  15722784 cttgctatgttacattgactttttcaatcaaatata----tcgcaaagtatgaaaaggtgatttgcctaatgtgtaaacattctttcactctttttaaaa 15722879  T
Q  230 tgtcttcgtccttt 243  Q
    ||||||||||||||    
T  15722880 tgtcttcgtccttt 15722893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 281
Target Start/End: Original strand, 31720 - 31926
Alignment:
Q  70 ttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnc 169  Q
    |||||||| || |||||||||| |||||||||||||||| |||| ||  ||||||||||||||||||||||||||  |||||||||| |||             
T  31720 ttctccaaaatatctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttacatcaactttttcaatcaaaata----- 31814  T
Q  170 tcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagt 269  Q
    || |||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  31815 tctcaaagtatgaataagtgatatgactaatgtgtaaatattttttcactctttttgaaatgtcttcgtcctttgcaagacttgaatgtgttatcaaagt 31914  T
Q  270 tctgttcttatt 281  Q
    | ||||||||||    
T  31915 tttgttcttatt 31926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 42882457 - 42882666
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||          
T  42882457 tatttctccaacatttatcaaacaacaacatcaattatatgctccagtttaattaacattccacttgctatgtcacattgactttttcaatcaa----aa 42882552  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       |||||||||||| | || |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||  |  ||||||||||||    
T  42882553 atatcgcaaagtatg-agaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaa 42882651  T
Q  267 agttctgttcttatt 281  Q
    |||| ||||||||||    
T  42882652 agttttgttcttatt 42882666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 260
Target Start/End: Complemental strand, 38926110 - 38925910
Alignment:
Q  55 gctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttc 154  Q
    |||||| | ||||||||||| ||||||||| |||||||||||||||||||   | |||||||||||||||||| |||| |||||||||||||||||||||    
T  38926110 gctcttgcgttttatttctcaaagatttctaaaacaagaacatcacttat---ccccagtttaattaacattcaacttactatgttacattgactttttc 38926014  T
Q  155 aaacaatnnnnnnnctcgcaaagtatgaataattgatatgactca--tgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagattt 252  Q
    || |||         ||||||| ||||||||| |||||||||| |  ||| |||||||| ||||||| ||||||||||||||| ||| ||| ||||| ||    
T  38926013 aatcaa----aaatatcgcaaattatgaataagtgatatgactaatgtgtgtaaatattctttcactatttttgaaatgtctttgtcattttcaagactt 38925918  T
Q  253 ggatgtgt 260  Q
    ||||||||    
T  38925917 ggatgtgt 38925910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 96 - 270
Target Start/End: Original strand, 22545234 - 22545401
Alignment:
Q  96 atcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnctcgcaaagtatgaataattgatatga 195  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||| |||         || |||||||||||||| ||||||||    
T  22545234 atcacttatatgctccggtttaattaacattccatttgctatattacatcgactttttcaatcaaaaata----tcccaaagtatgaataagtgatatga 22545329  T
Q  196 ctcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagtt 270  Q
    || |||| |||||||||||||||||||| |||||||   ||||||| ||||||| |||||| |||||||||||||    
T  22545330 ctaatgtgtaaatattatttcactctttgtgaaatg---tcgtcctgtgcaagacttggatatgttatcaaagtt 22545401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 32726251 - 32726339
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttca 155  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||  ||||||| | | |||||| |||||||||||||    
T  32726251 tatttttccaaaatttctcaaacaagaacatcacttatatgccccagtttaattattattccacgttccatgttagattgactttttca 32726339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 32726407 - 32726471
Alignment:
Q  213 tttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagttctgttct 277  Q
    ||||||||| ||||||||||||||| ||  || | || |||||||||||||||| ||| ||||||    
T  32726407 tttcactctatttgaaatgtcttcgccccatgtatgacttggatgtgttatcaatgttttgttct 32726471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 67 - 270
Target Start/End: Original strand, 7964333 - 7964531
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||          
T  7964333 tatttctccaacatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgttacattgactttttcaatcaa----aa 7964428  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       | |||||||||| | || |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||  |  ||||||||||||    
T  7964429 atattgcaaagtatg-agaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaa 7964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 43974097 - 43974298
Alignment:
Q  66 ttatttctccaagatttctcaaacaagaacatcacttatatgc-tccagtttaattaacattccacttgctat----gttacattgactttttcaaacaa 160  Q
    ||||||||||||  ||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||    
T  43974097 ttatttctccaa--tttgtcaaacaagaacaccacttatatgcctccagtttaattaacatttcacttgctatatatgttacattgactttttcaatcaa 43974194  T
Q  161 tnnnnnnnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgt 260  Q
             || |||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  43974195 aata-----tcacaaagtatgaataagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtctttgtcctttgcaagacttggatgtgt 43974289  T
Q  261 tatcaaagt 269  Q
    |||||||||    
T  43974290 tatcaaagt 43974298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 67 - 281
Target Start/End: Complemental strand, 8224404 - 8224195
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| |||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||          
T  8224404 tatttctccaacatttatcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaa----aa 8224309  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       |||||||||||| | || |||||||||| |||| |||||||  |||||||| ||||||||||||||||||||||| ||||  |  ||||||||||||    
T  8224308 atatcgcaaagtatg-agaagtgatatgactaatgtgtaaatatgctttcactccttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaa 8224210  T
Q  267 agttctgttcttatt 281  Q
    |||| ||||||||||    
T  8224209 agttttgttcttatt 8224195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 72 - 281
Target Start/End: Complemental strand, 22932710 - 22932505
Alignment:
Q  72 ctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnctc 171  Q
    |||||| ||||||||||||| |||||||||||||||| || | ||  |||||||||||||||||||| |||||  |||||||||| |||         ||    
T  22932710 ctccaaaatttctcaaacaataacatcacttatatgccccggattggttaacattccacttgctatgctacatcaactttttcaatcaaaaata----tc 22932615  T
Q  172 gcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagttc 271  Q
     |||||||||||||| |||||||||| |||  |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||     
T  22932614 tcaaagtatgaataagtgatatgactaatgcgtaaatattctttcactctttttgaaatgtcttcgtcctttgcaaaacttggatgtgttattaaagttt 22932515  T
Q  272 tgttcttatt 281  Q
    ||||||||||    
T  22932514 tgttcttatt 22932505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 16046673 - 16046715
Alignment:
Q  114 tttaattaacattccacttgctatgttacattgactttttcaa 156  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  16046673 tttaattaacattccactagctatattacattgactttttcaa 16046715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 70 - 281
Target Start/End: Complemental strand, 22385 - 22173
Alignment:
Q  70 ttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnc 169  Q
    |||||||| ||||||||||||| |||||||||||||||| |||| ||  ||||||||||||||||||||||| ||  |||||||||| |||             
T  22385 ttctccaaaatttctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttatatcaactttttcaatcaaaaata---- 22290  T
Q  170 tcgcaaagtatgaataattgatatgactcat----gtataaatattatttc-actctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatc 264  Q
    || |||||||||||||| |||||||||| ||    || |||||||| |||  ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22289 tctcaaagtatgaataagtgatatgactaattaaagtgtaaatattttttttactctttttgaaatgtcttcgtcctttgcaagacttggatgtgttatc 22190  T
Q  265 aaagttctgttcttatt 281  Q
    |||||| ||||||||||    
T  22189 aaagttttgttcttatt 22173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 1593 - 1679
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgacttttt 153  Q
    |||| |||||| |||| ||||||||||||||||| |||||   |||  |||||||||||||||||||||||||||||||||||||||    
T  1593 tattactccaaaatttttcaaacaagaacatcacatatatatcccaagttaattaacattccacttgctatgttacattgacttttt 1679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 28777 - 28822
Alignment:
Q  204 taaatattatttcactctttttgaaatgtcttcgtcctttgcaaga 249  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||    
T  28777 taaacattgtttcactctttttgaaatgtctccgtcctttgcaaga 28822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 16689 - 16734
Alignment:
Q  204 taaatattatttcactctttttgaaatgtcttcgtcctttgcaaga 249  Q
    |||| ||| ||||||||||||||||||| || ||||||||||||||    
T  16689 taaacattgtttcactctttttgaaatgcctccgtcctttgcaaga 16734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 260
Target Start/End: Complemental strand, 3569183 - 3568983
Alignment:
Q  55 gctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttc 154  Q
    |||||| | ||||||||||| ||||||||| |||||||||||||||||||   | |||||||||||||||||| |||| |||||||||||||||||||||    
T  3569183 gctcttgcgttttatttctcaaagatttctaaaacaagaacatcacttat---ccccagtttaattaacattcaacttactatgttacattgactttttc 3569087  T
Q  155 aaacaatnnnnnnnctcgcaaagtatgaataattgatatgactca--tgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagattt 252  Q
    || |||         ||||||| ||||||||| |||||||||| |  ||| |||||||| ||||||| ||||||||||||||| ||| ||| ||||| ||    
T  3569086 aatcaa----aaatatcgcaaattatgaataagtgatatgactaatgtgtgtaaatattctttcactatttttgaaatgtctttgtcattttcaagactt 3568991  T
Q  253 ggatgtgt 260  Q
    ||||||||    
T  3568990 ggatgtgt 3568983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 67 - 243
Target Start/End: Original strand, 39702535 - 39702707
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    |||| |||||| |||||||||||||||||||||| |||||   |||  |||||||||||||||||||||||||||||||||||||||||| |||          
T  39702535 tattactccaaaatttctcaaacaagaacatcacatatatatcccaagttaattaacattccacttgctatgttacattgactttttcaatcaa----aa 39702630  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtccttt 243  Q
       | |||||||||  |||| ||||  |||| || | |||| |||||||||||||||||||||||||| ||||||||    
T  39702631 atattgcaaagtatttataaatgatgcgactaatatgtaaacattatttcactctttttgaaatgtctccgtccttt 39702707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 1966838 - 1966759
Alignment:
Q  170 tcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaaga 249  Q
    |||||||||||||| |  ||||||| || |||| |||| ||| ||||||||||||| ||||||||||||||||| |||||    
T  1966838 tcgcaaagtatgaaaaggtgatatgcctaatgtgtaaacattctttcactctttttaaaatgtcttcgtcctttacaaga 1966759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 67 - 281
Target Start/End: Complemental strand, 7112 - 6904
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||| | |||||||||||||||| ||||||||||| ||||||| ||||     ||||         
T  7112 tatttctccaacatttctcaaacaacaacatcaattaaatgccctagtttaattaacattctacttgctatgtcacattgaatttt-----caatcaaaa 7018  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaa 266  Q
       | |||||||||||  || |||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| ||||  |  ||||||||||||    
T  7017 atattgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcactcttttttaaatgtcttcgtcctttgaaagacataaatgtgttatcaa 6919  T
Q  267 agttctgttcttatt 281  Q
    |||| ||||||||||    
T  6918 agttttgttcttatt 6904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 6506639 - 6506463
Alignment:
Q  67 tatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnn 166  Q
    ||||||||||| |||||||||||||||||||||| |||||   |||  ||||||||||||||||||||||||||||||||||||||||||  ||          
T  6506639 tatttctccaaaatttctcaaacaagaacatcacatatatatcccaagttaattaacattccacttgctatgttacattgactttttcaataaa----aa 6506544  T
Q  167 nnctcgcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaaga 249  Q
       | |||||||||  |||| ||||| |||| || |  ||||||  |||||||||||||||||||||||||||||||||||||    
T  6506543 atattgcaaagtatttataaatgatacgactaatatgcaaatat--tttcactctttttgaaatgtcttcgtcctttgcaaga 6506463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 260
Target Start/End: Complemental strand, 50350 - 50149
Alignment:
Q  55 gctcttccattttatttctccaagatttctcaaacaagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttc 154  Q
    |||||| | ||||||||||| ||||||||| ||||||||| |||||||||   | |||||||||||||||||| ||||||||||||||||||||||||||    
T  50350 gctcttgccttttatttctcaaagatttctaaaacaagaatatcacttat---ccccagtttaattaacattcaacttgctatgttacattgactttttc 50254  T
Q  155 aaacaatnnnnnnnctcgcaaagtatgaataattgatatgac----tcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagat 250  Q
    ||  ||         ||||||| ||||||||| |||||||||    | |||| |||||||| ||||||| ||||||||||||||| ||| ||| |||||     
T  50253 aataaa-----aatatcgcaaattatgaataagtgatatgactaattaatgtgtaaatattctttcactatttttgaaatgtctttgtcattttcaagac 50159  T
Q  251 ttggatgtgt 260  Q
    || |||||||    
T  50158 ttcgatgtgt 50149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 103 - 281
Target Start/End: Original strand, 5162 - 5332
Alignment:
Q  103 atatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaatnnnnnnnctcgcaaagtatgaataattgatatgactcatgt 202  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||  |||        ||| |||||||| | || | |||||||| ||||    
T  5162 atatgccccagtttaattaacattccacttgctatgtcacattgactttttcaattaata-------tcgaaaagtatg-agaagttatatgactaatgt 5253  T
Q  203 ataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagttctgttcttatt 281  Q
     |||||| | |||||||||| ||||||||| ||||||||||| ||||  |  |||||||||||||||| ||||||||||    
T  5254 gtaaatagtctttcactcttgttgaaatgtattcgtcctttgaaagacataaatgtgttatcaaagttttgttcttatt 5332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 9577 - 9468
Alignment:
Q  172 gcaaagtatgaataattgatatgactcatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaagatttggatgtgttatcaaagttc 271  Q
    ||||||||||||||| ||| |||||| |||| | || ||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||     
T  9577 gcaaagtatgaataagtgacatgactaatgtcttaacattctttcactctttttgaaatgccttcgtcctttgcaagacttagatgtgttatcaaagttt 9478  T
Q  272 tgttcttatt 281  Q
    ||||| ||||    
T  9477 tgttcctatt 9468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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