View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16769_low_16 (Length: 302)

Name: NF16769_low_16
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16769_low_16
NF16769_low_16
[»] chr7 (2 HSPs)
chr7 (133-282)||(46437506-46437655)
chr7 (158-233)||(39780485-39780557)
[»] chr1 (3 HSPs)
chr1 (133-279)||(18431412-18431558)
chr1 (133-278)||(22788168-22788310)
chr1 (165-233)||(1014321-1014386)
[»] chr2 (3 HSPs)
chr2 (133-279)||(16916148-16916291)
chr2 (158-233)||(4076365-4076437)
chr2 (234-275)||(2819791-2819832)
[»] chr8 (3 HSPs)
chr8 (133-282)||(28535356-28535502)
chr8 (158-252)||(11463695-11463789)
chr8 (158-233)||(45483642-45483714)
[»] chr3 (7 HSPs)
chr3 (133-279)||(26555669-26555812)
chr3 (133-282)||(52118488-52118634)
chr3 (158-233)||(26905744-26905816)
chr3 (158-233)||(36615224-36615296)
chr3 (158-233)||(25069519-25069591)
chr3 (158-233)||(28211463-28211535)
chr3 (158-211)||(2125523-2125573)
[»] chr6 (4 HSPs)
chr6 (133-271)||(16693162-16693297)
chr6 (133-250)||(5013888-5014005)
chr6 (158-233)||(18819506-18819578)
chr6 (158-233)||(24904412-24904484)
[»] chr4 (2 HSPs)
chr4 (158-282)||(8903451-8903575)
chr4 (158-282)||(45067508-45067632)
[»] chr5 (4 HSPs)
chr5 (174-282)||(424539-424647)
chr5 (174-279)||(18113537-18113642)
chr5 (158-227)||(17074816-17074885)
chr5 (158-233)||(25634224-25634296)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 46437506 - 46437655
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
46437506 acaaaacacaattcacaatcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcaatcagcagcatcattttctctcttcact 46437605  T
233 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagcca 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
46437606 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagcca 46437655  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 39780485 - 39780557
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||| || ||| |||||||||||| ||||    
39780485 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcaacaacataattttctctcttcactc 39780557  T

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Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 18431558 - 18431412
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||    
18431558 acaaatcacaattcacaatcgtctttcttctcacaacaaacaaacaaacctctccttcttccactctcatcagtcagcaacatcattttctctcttcact 18431459  T
233 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaag 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
18431458 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaag 18431412  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 22788310 - 22788168
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||    
22788310 acaaatcacaattcacaatcttctttcttctcacaacaaacaaacaaacctctc---cttccactctcatcagtcagcagcatcattttctctcttcact 22788214  T
233 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaa 278  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||    
22788213 ccttcttcaattctagtgtatctctcaattctcactctaagtctaa 22788168  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 1014321 - 1014386
Alignment:
165 acaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    ||||||||||||||||||||||   |||||||||||||| |||| || ||| |||||||||||| ||||    
1014321 acaacaaacaaacaaacctctc---cttccactctcatcggtcaacaacataattttctctcttcactc 1014386  T

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Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 16916291 - 16916148
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |||    
16916291 acaaatcacaattcacaatcgtctttcttctcacaacaaacaaacaaacctctccttcttccactctcatcagtcagcaacaacattttctctcttcact 16916192  T
233 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaag 279  Q
    |   |||||||||||||||||||||||||||||||||||||||||||    
16916191 c---cttcaaatctagtgtatctctcagttctcactctaagtctaag 16916148  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 4076437 - 4076365
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| |||||||||||||||||||||| |||   ||||||||||||||| || ||| |||||||||||| ||||    
4076437 tcttcttacaacaaacaaacaaacctctctttc---cactctcatcagtcaacaacataattttctctcttcactc 4076365  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 2819791 - 2819832
Alignment:
234 cttcttcaaatctagtgtatctctcagttctcactctaagtc 275  Q
    |||||||||| ||||| | |||||||||||||||||||||||    
2819791 cttcttcaaacctagtatttctctcagttctcactctaagtc 2819832  T

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Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 28535356 - 28535502
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||| |||    
28535356 acaaatcacaattcacaatctcctttcttctcacaacaaacaaacagacctctc---cttccactctcatcagtcagcagcatcattttctctcttcact 28535452  T
233 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagcca 282  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
28535453 ccttcttcaaatctagtgtatctctcaattctcactctaagtctaagcca 28535502  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 11463789 - 11463695
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgta 252  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
11463789 tcttctcacaacaaacaaacaaacctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtgta 11463695  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 45483642 - 45483714
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
45483642 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 45483714  T

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Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 26555669 - 26555812
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||| |||    
26555669 acaaatcacaattcacaatcttctttcttctcacaacaaacaaacaaacctctc---cttccactctcatcagtcagcatcatcattttctctcttcact 26555765  T
233 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaag 279  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||    
26555766 ccttcttcaattctagtgtatctctcaattctcactctaagtctaag 26555812  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 52118488 - 52118634
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| ||  ||||| ||||||||||||||||||||| ||||   ||||||||||| || |||||||||||||||||||||||| |||    
52118488 acaaatcacaattcacaatctcctttcctctcacaacaaacaaacaaacatctc---cttccactctcgtcggtcagcagcatcattttctctcttcact 52118584  T
233 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagcca 282  Q
    |||||||||| |||||||||||||||| |||||||||||||| |||||||    
52118585 ccttcttcaattctagtgtatctctcaattctcactctaagtttaagcca 52118634  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 26905816 - 26905744
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
26905816 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 26905744  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 36615224 - 36615296
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
36615224 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 36615296  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 25069519 - 25069591
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||| || ||| |||||||||||| ||||    
25069519 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcaacaacataattttctctcttcactc 25069591  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 28211535 - 28211463
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||| ||||   ||||||||||||| |||||||| ||| |||||||||||| ||||    
28211535 tcttcttacaacaaacaaacaaacatctc---cttccactctcataagtcagcaacataattttctctcttcactc 28211463  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 2125523 - 2125573
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagca 211  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||||||    
2125523 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagca 2125573  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 16693162 - 16693297
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||    
16693162 acaaatcacaattcacaatctcctttcttctcacaacaaacaaacaaacctctc---cttccactctcatcagtcagcagcatcattttctctcttcact 16693258  T
233 ccttcttcaaatctagtgtatctctcagttctcactcta 271  Q
    ||||||||||||||||||||||||||| |||||||||||    
16693259 ccttcttcaaatctagtgtatctctcaattctcactcta 16693297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 5014005 - 5013888
Alignment:
133 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 232  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||| |||| |||    
5014005 acaaatcacaattcacaatcgtctttcttctcacaacaaacaaacaaacctcttcttcttccactctcatcagtcagcaacatcattttctatcttcact 5013906  T
233 ccttcttcaaatctagtg 250  Q
    ||||||||||||||||||    
5013905 ccttcttcaaatctagtg 5013888  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 18819578 - 18819506
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
18819578 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 18819506  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 24904484 - 24904412
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||| |||||| ||| |||||||||||| ||||    
24904484 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcaatcagcaacataattttctctcttcactc 24904412  T

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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 8903451 - 8903575
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctct 257  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
8903451 tcttctcacaacaaataaacaaatctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtgtatctct 8903550  T
258 cagttctcactctaagtctaagcca 282  Q
    ||||||||||||||||| |||||||    
8903551 cagttctcactctaagtgtaagcca 8903575  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 158 - 282
Target Start/End: Complemental strand, 45067632 - 45067508
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctct 257  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||    
45067632 tcttctcacaacaagcaaacaaacctctccttcttccactctcagcagtcagcaacatcattttctctcgtcactcctttttcaaatctagtgtatctct 45067533  T
258 cagttctcactctaagtctaagcca 282  Q
    |||||||||||||||||||||||||    
45067532 cagttctcactctaagtctaagcca 45067508  T

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Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 424647 - 424539
Alignment:
174 aaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctctcagttctcactctaag 273  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
424647 aaacaaacctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtgtatctctcagttctcactctaag 424548  T
274 tctaagcca 282  Q
    |||||||||    
424547 tctaagcca 424539  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 18113642 - 18113537
Alignment:
174 aaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctctcagttctcactctaag 273  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
18113642 aaacaaacctctccttcttcccctctcagcagtcagcaacatcattttctctcttcactccttcttcaaatctagtgtatctctcagttctcactctaag 18113543  T
274 tctaag 279  Q
    ||||||    
18113542 tctaag 18113537  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 17074816 - 17074885
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctct 227  Q
    |||||||||||||| |||||| ||||||| ||||||||||| || |||||| || |||||||||||||||    
17074816 tcttctcacaacaaccaaacatacctctccttcttccactcccagcagtcaacaacatcattttctctct 17074885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 25634296 - 25634224
Alignment:
158 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 233  Q
    |||||| |||||||||||||||||||||| |||   |||||||||||||||||| ||| |||||||||||| ||||    
25634296 tcttcttacaacaaacaaacaaacctctctttc---cactctcatcagtcagcaacataattttctctcttcactc 25634224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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