View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_low_18 (Length: 255)
Name: NF16769_low_18
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 51804329 - 51804575
Alignment:
| Q |
1 |
attttgtacactgtccctgaccccccatgtcccattatattcttatcaaccaaagactcaacaatctctctttgatcaaaactaatcatgtgaaaacttt |
100 |
Q |
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| T |
51804329 |
attttgtacactgtccctgaccctccatgtcccattatattcttatcaaccaaagactcaacaatctctctttgatcaaaactaatcatgtgaaaactct |
51804428 |
T |
|
| Q |
101 |
taacatcataagagaaaaatgatgaagagagtgtgtattcgtgttcaaccgcagacacatttttgccacaccnnnnnnncaagaacaaagcagcacctac |
200 |
Q |
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| T |
51804429 |
taacatcataagagaaaaatgatgaagagagtgtgtattcgtgttcaaccgcagacacatttttgccacacctttttttcaagaacaaagcagcacctac |
51804528 |
T |
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| Q |
201 |
aaaaatcaaaatcacagatacaccggccacccatatagtgttcatct |
247 |
Q |
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| T |
51804529 |
aaaaatcaaaatcacagatacaccggccacccatatagtgttcatct |
51804575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 36578825 - 36578938
Alignment:
| Q |
32 |
ccattatattcttatcaaccaaagactcaacaatctctctttgatcaaaactaatcatgtgaaaacttttaacatcataagagaaaaatgatgaagagag |
131 |
Q |
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| T |
36578825 |
ccataatattcttatccatcaaggactcaacaatctctttttgatcaaaatttatcatgtgaaagctcttaacataatacgag-aaaattatgaagagaa |
36578923 |
T |
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| Q |
132 |
tgtgtattcgtgttc |
146 |
Q |
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| T |
36578924 |
tgtgtactcatgttc |
36578938 |
T |
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