View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_low_3 (Length: 551)
Name: NF16769_low_3
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 37116309 - 37115774
Alignment:
| Q |
1 |
tgggttccgttgagcttggaatttgggatgccactatttagtccaaccttgtgcagtaatatatgtagaaggatagtttcatcggagatgcttcagtctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37116309 |
tgggttccgttgagcttggaatttgggatgccactatttagtccaaccttgtgcagtaatatatgtagaaggatagtttcatcggagatgcttcagtctg |
37116210 |
T |
|
| Q |
101 |
ggtcatttgttggacaccaagatgcgatgcaaaacttaaggaagaagttgcatgacatttgtgctgagtaccaatcaacaggtttcactgcaaagcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37116209 |
ggtcatttgttggacaccaagatgcgatgcaaaacttaaggaagaagttgcatgacatttgtgctgagtaccaatcaacaggtttcactgcaaagcttct |
37116110 |
T |
|
| Q |
201 |
ttaccagaaacagccaacaaaggagtctttcgggaagcttcagaaccatgccagtggaaggtggaatccacttctagatccttctagtcccatttcaggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37116109 |
ttaccagaaacagccaacaaaggagtctttcgggaagcttcagaaccatgccagtggaaggtggaatccacttctagatccttctagtcccatttcaggg |
37116010 |
T |
|
| Q |
301 |
gcatcaagtgtccatcagaggttaaaacttgctactcggcagcgcagtcaaactgaagtgttgagctttgatggcagtattcttaggtttgttgccgagc |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37116009 |
gcatcaagtgtccatcagaggttaaaacttgctacccggcagcgcagtcaaactgaagtgttgagctttgatggcagtattcttaggtttgttgccgagc |
37115910 |
T |
|
| Q |
401 |
ttctattaattcaataagattcattacataaaattcttttagcattatagtgacaaacataaaccagaaggattgttttttataaggctcgtatttttta |
500 |
Q |
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| T |
37115909 |
ttctattaattcaataagattcattacataaaattcttttagcattatagtgacaaacataaaccagaaggattgttttttataaggctcgtatttttta |
37115810 |
T |
|
| Q |
501 |
tcttctaattatcctaagtctcaggaagtgtattat |
536 |
Q |
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||| |||||||||| ||||||||||||||||||||| |
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| T |
37115809 |
tctcctaattatcccaagtctcaggaagtgtattat |
37115774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 36250567 - 36250958
Alignment:
| Q |
1 |
tgggttccgttgagcttggaatttgggatgccactatttagtccaaccttgtgcagtaatatatgtagaaggatagtttcatcggagatgcttcagtctg |
100 |
Q |
| |
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|||||||||||||| | || |||||||||||| ||||||| || | ||||| | |||||||||||||||| | |||||||| || ||||||| |||| |
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| T |
36250567 |
tgggttccgttgagtgttgagtttgggatgccattatttagcccgaagttgtgtaataatatatgtagaagggtggtttcatctgaattgcttcaatctg |
36250666 |
T |
|
| Q |
101 |
ggtcatttgttggacaccaagatgcgatgcaaaacttaaggaagaagttgcatgacatttgtgctgagtaccaatcaacaggtttcactgcaaagcttct |
200 |
Q |
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| ||||||| || |||||| ||| ||||||| ||||| ||| || | |||||||||| ||| ||||||||| |||||||| |||| ||| | || |
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| T |
36250667 |
gatcatttgatgaacaccatcgtgcaatgcaaagcttaaagaaaaaaatacatgacatttatgcagagtaccaagcaacaggtcctgctgctaaggtact |
36250766 |
T |
|
| Q |
201 |
ttaccagaaacagccaacaaaggagtctttcgggaagcttcagaaccatgccagtggaaggtggaatccacttctagatccttctagtcccatttcaggg |
300 |
Q |
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||||||||| ||| | || || |||| | | ||| |||| |||| |||||||| ||||||||| | | || ||||| ||||||||||||| |
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| T |
36250767 |
ttaccagaaggagcaagttaaagaatcttcacgacaacttatgaactatgctagtggaagatggaatccattagtggacccttcctctcccatttcaggg |
36250866 |
T |
|
| Q |
301 |
gcatcaagtgtccatcagaggttaaaacttgctactcggcagcgcagtcaaactgaagtgttgagctttgatggcagtattcttaggtttgt |
392 |
Q |
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||||||||| ||||| |||||||||||||| | ||| | ||| || ||||||||| || ||||||||||||||||||||||||||||| |
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| T |
36250867 |
acatcaagtgagcatcaaaggttaaaacttgcaaatcgagaacgctgtagaactgaagttttaagctttgatggcagtattcttaggtttgt |
36250958 |
T |
|
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