View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16769_low_4 (Length: 514)
Name: NF16769_low_4
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Original strand, 32644005 - 32644465
Alignment:
| Q |
16 |
gttagttgtctaattgtatagttcttgtaacctccaattgtttactttattgtaaagatggtattattcctacttaagtacaaaaataacaattcataga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32644005 |
gttagttgtctaattgtatagttcttgtaacctccaattgtttactttattataaagatggtattattcctacttaagtacaaaaataacaattcataga |
32644104 |
T |
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| Q |
116 |
tcactctccaatattttcctttcgtaccaaacatagagttcatgttacaaaattcattttttgtatttatcacatgcgtatcaaagagcataaacatgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32644105 |
tcactctccaatattttcctttcgtaccaaacatagagttcatgttacaaaattcattttttgtatttatcacatgcgtatcaaagagcataaacatgca |
32644204 |
T |
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| Q |
216 |
tataaatcctcactgcattatttacatagattacaaactcaacttgcccctacttgtatatatgctcaatacaagtacgtagtaattacaatgcatgaca |
315 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32644205 |
tataaatcctcactgcattatttacataggttacaaactcaacttgcccctacttgtatatatgctcaatacaagtacgtagtaattacaatgtatgaca |
32644304 |
T |
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| Q |
316 |
aatttccgtaggctcaaaatctctaggcacattctgatttgattagagccaaatgctctacattcattgtacttcctacatgcaattgtgacattttctc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32644305 |
aatttccgtaggctcaaaatctctaggcacattctgatttgattagagccaaatgctctacattcattgtacttcctacatgcaattgtgacattttctc |
32644404 |
T |
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| Q |
416 |
caatgattatggaccaacaagaagtcactgactagttaaaccgttattgctacatacaact |
476 |
Q |
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| T |
32644405 |
caatgattatggaccaacaagaagtcattgactagttaaaccgttattgctacatacaact |
32644465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 504
Target Start/End: Original strand, 32644482 - 32644510
Alignment:
| Q |
476 |
tttgttgggctcctctaatttatcctttg |
504 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32644482 |
tttgttgggctcctctaatttatcctttg |
32644510 |
T |
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