View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16769_low_8 (Length: 411)
Name: NF16769_low_8
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 45343127 - 45343507
Alignment:
| Q |
15 |
actcccaactccaatagcaacaaaaggtactttataacatttattgacgactttagtagaaaagtgtggatttattttcttgctgaaaaatctgaagcat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45343127 |
actcccaactccaatagcaacaaaaggtactttataacattcattgacgactttagtagaaaagtgtggatttattttcttgctgaaaaatctgaagcat |
45343226 |
T |
|
| Q |
115 |
ttacaactttcaaaaattataaaagtcttgttgagaaggagtcaggtgcccttatatgttgtgtacgcactgata-ggggcggagaattcacctcaaatg |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45343227 |
ttacaactttcaaaaattataaaagccttgttgagatggagtcaggtgcccttatatgttgtgtacgcactgatagggggcggagaattcacctcaaatg |
45343326 |
T |
|
| Q |
214 |
agtttaatgaattttgtaaaatcaatggcataagcaggcaacttacaacatcctacactccacaacaaaatggcgtagcgtagcgcaaaaatcggaccat |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45343327 |
tgtttaatgaattttgt-aaatcaatggcataagtaggcaacttacaacatcctacactccacaacaaaatggcgtagcggagcgcaaaaatcggaccat |
45343425 |
T |
|
| Q |
314 |
tatgaatatggttcggtgcatgctttgtgacaaacaagtaccgaagtcattttggccagaagctgcaaaatggacagttcat |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45343426 |
tatgaatatggttcggtgcatgctttgtgacaaacaagtaccgaagtcattttggttagaagctgcaaaatggacagttcat |
45343507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 48200566 - 48200705
Alignment:
| Q |
12 |
atcactcccaactccaatagcaacaaaaggtactttataacatttattgacgactttagtagaaaagtgtggatttattttcttgctgaaaaatctgaag |
111 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||||| || | |||||||| ||||||| | ||||||| |||||||||||| | | || |||||||| | |
|
|
| T |
48200566 |
atcactcccatatcaaatggcagcaaaaggtacttaatcagttttattgatgactttactcgaaaagtttggatttattttttggtagagaaatctgatg |
48200665 |
T |
|
| Q |
112 |
catttacaactttcaaaaattataaaagtcttgttgagaa |
151 |
Q |
| |
|
|||| | ||||| ||| ||| |||||||||||||||||| |
|
|
| T |
48200666 |
cattcaatacttttaaacattttaaaagtcttgttgagaa |
48200705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 48209149 - 48209288
Alignment:
| Q |
12 |
atcactcccaactccaatagcaacaaaaggtactttataacatttattgacgactttagtagaaaagtgtggatttattttcttgctgaaaaatctgaag |
111 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||||| || | |||||||| ||||||| | ||||||| |||||||||||| | | || |||||||| | |
|
|
| T |
48209149 |
atcactcccatatcaaatggcagcaaaaggtacttaatcagttttattgatgactttactcgaaaagtttggatttattttttggtagagaaatctgatg |
48209248 |
T |
|
| Q |
112 |
catttacaactttcaaaaattataaaagtcttgttgagaa |
151 |
Q |
| |
|
|||| | ||||| ||| ||| |||||||||||||||||| |
|
|
| T |
48209249 |
cattcaatacttttaaacattttaaaagtcttgttgagaa |
48209288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 20450419 - 20450223
Alignment:
| Q |
27 |
aatagcaacaaaaggtactttataacatttattgacgactttagtagaaaagtgtggatttattttcttgctgaaaaatctgaagcatttacaactttca |
126 |
Q |
| |
|
||||||||||| |||||| || ||| |||||||| || ||||| || ||| | ||||||||||| || ||||||||| |||| ||||| ||| |||| |
|
|
| T |
20450419 |
aatagcaacaagaggtacattttaagctttattgatgattttagcaggaaaatttggatttatttcctagctgaaaaaggtgaaacattttcaatgttca |
20450320 |
T |
|
| Q |
127 |
aaaattataaaagtcttgttgagaaggagtcaggtgcccttatatgttgtgtacgcactgataggggcggagaattcacctcaaatgagtttaatga |
223 |
Q |
| |
|
| |||| ||| || |||||||| || ||| |||| ||||||||| || | |||||| ||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
20450319 |
agaattttaagagccttgttgaaaaagagacaggaagtagtatatgttgcttaagaactgatcggggcggtgaattcaattcacatgagtttaatga |
20450223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University