View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16769_low_9 (Length: 400)
Name: NF16769_low_9
Description: NF16769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16769_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 386
Target Start/End: Original strand, 47897497 - 47897859
Alignment:
| Q |
8 |
tgaaatgaagtggactgataatttgtttctgtatagaaataataattctgtgaacaggaaagagagctttttcaccattcaaagtcaggtcggagtcggt |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47897497 |
tgaaatgaagtggaatgataatttgtttctgtatagaaataataattctgtgaacaggaaagagagctttttcaccattcaaagtctggtcggagtcggt |
47897596 |
T |
|
| Q |
108 |
tcacctccgatttttagtcacctaatctttcagctgctatcgacaacatcatgtcaagaatcacaatcattaaagatgcaaacagacctttcgtttttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47897597 |
tcacctccgatttttagtcacctaatcttttagctgctatcgacaacatcatgtcaagaatcacaatcattaaagatgcaaacagacctttcgtttttga |
47897696 |
T |
|
| Q |
208 |
aacgagtacgagtcgtgtggcgcagtttaagactctccaaacattactgtgnnnnnnnntgcatacnnnnnnnnccttccaaataagaaatgctacaatt |
307 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
47897697 |
aacaagtacgagtcgtgtg--gcagtttaagactctccaaacattactgtgaaaaaaaatg--------------cttccaaataagaaatgctacaatt |
47897780 |
T |
|
| Q |
308 |
tatgccaagacccaaccatcaaccaaactaggtaagcacagttatcataattgcaattcaaaggatgcataaaaaatgt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47897781 |
tatgccaagacccaaccatcaaccaaactaggtaagcacagttatcataattgcaattcaaaggatgcataaaaaatgt |
47897859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 47909912 - 47909988
Alignment:
| Q |
310 |
tgccaagacccaaccatcaaccaaactaggtaagcacagttatcataattgcaa-ttcaaaggatgcataaaaaatg |
385 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47909912 |
tgccaagacccaaccataaaccaaactaggtatgcacagttatcataattgcaatttcaaaggatgcataaaaaatg |
47909988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 76 - 258
Target Start/End: Complemental strand, 31211825 - 31211644
Alignment:
| Q |
76 |
ttttcaccattcaaagtcaggtcggagtcggttcacctccgatttttagtcacctaatctttcagctgctatcgacaacatcatgtcaagaatcacaatc |
175 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31211825 |
ttttcaccattcaaagtctggtcggagtaggttcacctccgatttttagtcacctaatctttcagctgctatcgacaacatcatgttaagaatcacaatc |
31211726 |
T |
|
| Q |
176 |
attaaagatgcaaacagacctttcg-tttttgaaacgagtacgagtcgtgtggcgcagtttaagactctccaaacattactgtg |
258 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31211725 |
attaaagatgcaaacagacctttcgatttttgaaacgagtacgagttgtgtg--gcagtttaagactctccaaacattactgtg |
31211644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 76 - 258
Target Start/End: Complemental strand, 31217580 - 31217399
Alignment:
| Q |
76 |
ttttcaccattcaaagtcaggtcggagtcggttcacctccgatttttagtcacctaatctttcagctgctatcgacaacatcatgtcaagaatcacaatc |
175 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31217580 |
ttttcaccattcaaagtctggtcggagtaggttcacctccgatttttagtcacctaatctttcagctgctatcgacaacatcatgttaagaatcacaatc |
31217481 |
T |
|
| Q |
176 |
attaaagatgcaaacagacctttcg-tttttgaaacgagtacgagtcgtgtggcgcagtttaagactctccaaacattactgtg |
258 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31217480 |
attaaagatgcaaacagacctttcgatttttgaaacgagtacgagttgtgtg--gcagtttaagactctccaaacattactgtg |
31217399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 31211590 - 31211486
Alignment:
| Q |
282 |
ccttccaaataagaaatgctacaatttatgccaagacccaaccatcaaccaaactaggtaagcacagttatcataattgcaattcaaaggatgcataaaa |
381 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31211590 |
ccttccaaataagacatgctacaatttatgccaagacccaaccatcaaccaaactaggtaagcacagatatcataattgcaattcaaaggatgcataaaa |
31211491 |
T |
|
| Q |
382 |
aatgt |
386 |
Q |
| |
|
||||| |
|
|
| T |
31211490 |
aatgt |
31211486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 31217345 - 31217241
Alignment:
| Q |
282 |
ccttccaaataagaaatgctacaatttatgccaagacccaaccatcaaccaaactaggtaagcacagttatcataattgcaattcaaaggatgcataaaa |
381 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31217345 |
ccttccaaataagacatgctacaatttatgccaagacccaaccatcaaccaaactaggtaagcacagatatcataattgcaattcaaaggatgcataaaa |
31217246 |
T |
|
| Q |
382 |
aatgt |
386 |
Q |
| |
|
||||| |
|
|
| T |
31217245 |
aatgt |
31217241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University